Pairwise Alignments

Query, 442 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

 Score =  492 bits (1266), Expect = e-143
 Identities = 251/414 (60%), Positives = 309/414 (74%), Gaps = 2/414 (0%)

Query: 3   VTTFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPV 62
           + TF++LELD  LL A+E  GF+RPT +QA AIP AL+GRDVL SAPTGTGKTAA+++P 
Sbjct: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61

Query: 63  LQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEV 122
           LQ+LLDFPR+K+GP RILILTPTRELAMQVA+ A+ LA NT L+I TITGGV Y  HA++
Sbjct: 62  LQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRN 182
            +  QDIVVAT GRLL+YI  E FDCRA+E LILDEADRMLDMGF   ++ ++ E RWR 
Sbjct: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181

Query: 183 QTMLFSATLEGEAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKVELLKHL 242
           QT+LFSATLEG  ++ F   LL+DP  V A P  RERKKI QWY+RAD++ HKVELLK +
Sbjct: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241

Query: 243 LKQEDALRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNVL 302
           L  E A R+IVF++ RER+ +L   L  A I   +++GEM Q +R   I R  +G VN+L
Sbjct: 242 L-TEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300

Query: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDYLLLQK 362
           +ATDVAARGID+PD+SHVINFD+PRS D YLHRIGRTGRAG+KGIAISLVEAHD  ++ +
Sbjct: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360

Query: 363 IGRYVDEPLKARVIDELRPTTRAPSEKMTGKPSKKALAKRAERKEKEKEKPRVK 416
           + RY+ E +K R ID LRP  + P  K   K  KK   K A +K K   KP+ K
Sbjct: 361 VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKK-KTTSKPKAK 413