Pairwise Alignments

Query, 442 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 460 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  291 bits (745), Expect = 3e-83
 Identities = 178/446 (39%), Positives = 249/446 (55%), Gaps = 9/446 (2%)

Query: 2   TVTTFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLP 61
           T   FS+  LD+ LL +LE  G   PT IQ  +IP  L GRD++ S+ TG+GKT A+LLP
Sbjct: 12  TALQFSDFSLDKRLLTSLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLP 71

Query: 62  VLQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAE 121
            +Q ++         PR+LIL PTRELA QV    R L ANT      I GG  + + A+
Sbjct: 72  AMQRVIATKALSKRDPRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAK 131

Query: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI-AGETRW 180
             + +   VVAT GRL  ++ + +     +E LILDEADRMLD+GFA+ +  I       
Sbjct: 132 ALARDPHFVVATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQLRAINQAADHK 191

Query: 181 RNQTMLFSATLEGEAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKVELLK 240
           R QT++FSATL+   I + A  LL++P  V+   S  E + I Q  Y  DNL HK +LL 
Sbjct: 192 RRQTLMFSATLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLCDNLSHKEQLLT 251

Query: 241 HLLKQEDALRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVN 300
            LL+ E   + I+F   R     LA +L   G +   L GE+ Q  R + + + + G+  
Sbjct: 252 RLLQLEPHKQVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSRGQQQ 311

Query: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDYLLL 360
           +LV TDVA+RG+D+ +VS VINFDMP+  + Y+HRIGRTGRAG KG AISLV   D++  
Sbjct: 312 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNF 371

Query: 361 QKIGRYVDEPLKARVIDELRPTTRA----PS-EKMTGKPSKKALAKRAERKEKEK-EKPR 414
           +++  ++ +  +   ++EL P  +     PS EK  GK   K  AK A+     K  KPR
Sbjct: 372 KQVQNFLRKSFEFSELEELAPKFKGLKDKPSQEKRLGKQQAKPKAKTAKAASSTKPTKPR 431

Query: 415 VKQ--RHRDTKNIGKRRKPSSATPET 438
            K+     D  +    RKP +   +T
Sbjct: 432 DKRFITGVDVGDAPMLRKPKAKLQDT 457