Pairwise Alignments

Query, 878 a.a., fimbrial usher FimD from Escherichia coli Nissle 1917

Subject, 842 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  707 bits (1825), Expect = 0.0
 Identities = 377/848 (44%), Positives = 522/848 (61%), Gaps = 58/848 (6%)

Query: 49  FNPRFLADDP--QAVADLSRFE-NGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQ-- 103
           FNPRFL D P      DLS +E N  E  PG YRV + +N   M +R + F      Q  
Sbjct: 35  FNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMESRTLEFKAATEAQRA 94

Query: 104 ----GIVPCLTRAQLASMGLNMASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLT 159
                +VPCL+R QL  MG+ + S   + +   +ACV    ++  A +H D   Q L ++
Sbjct: 95  KMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMS 154

Query: 160 IPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQ-----NRIGGNSHYAYLNLQSG 214
            PQA M   ARG +P   WD G+NA L++YNFSG++       +    NS   YLNL+SG
Sbjct: 155 FPQAAMKQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSG 214

Query: 215 LNIGAWRLRDNTTWSYNSSDRSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFD 274
           +N+GAWRLR+ +TW+ N  +      N W +I T L R I+PL+S+LTLGD  T GDIFD
Sbjct: 215 MNLGAWRLRNYSTWTRNDGN------NTWDNIGTSLSRAIVPLKSQLTLGDTSTAGDIFD 268

Query: 275 GINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTIND 334
            +  RG QL SD+ MLPDSQRGFAPVI GIA+  A+VT++QN Y IY + V PG F IND
Sbjct: 269 SVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQPGAFEIND 328

Query: 335 IYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPR 394
           +Y   NSGDL VTIKE+DGS Q F  P+SSV LLQREGH +YS++AGEYR+GN    +P+
Sbjct: 329 LYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPK 388

Query: 395 FFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQH 454
           F Q   ++GLP G+T+YGG   +D Y +   G+GKN G +GA+S+D+TQA S L ++   
Sbjct: 389 FGQLDAMYGLPYGFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENS 448

Query: 455 DGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPK 514
           +GQS RFLY+KS N SGT+ +L+GY+YSTSGY+ F + T  R +  +  +Q         
Sbjct: 449 EGQSYRFLYSKSFN-SGTDFRLLGYKYSTSGYYTFQEATDVRSDADSSYSQ--------- 498

Query: 515 FTDYYNLAYNKRGKLQLTVTQQLGRSSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDIN 574
                   Y+KR ++Q  VTQQLG   ++Y + + Q YW          AG N     +N
Sbjct: 499 --------YHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVN 550

Query: 575 WTLSYSLTKNAWQKGRDQMLALNVNIPFSH-WLRSDSKSQWRHASASYSMSHDLNGRMTN 633
           ++++Y+ TK+      D++L+ +++IP    W             ++Y ++ D +GR   
Sbjct: 551 YSVAYTWTKSPEWDESDRLLSFSMSIPLGRVW-------------SNYHLTTDQHGRTNQ 597

Query: 634 LAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQL 693
             GV GT LED+NL+YSVQ GY   G GNSGS     L+Y+GG G+A++GY+++ D +Q+
Sbjct: 598 QLGVSGTALEDHNLNYSVQEGYGSNGVGNSGS---VNLDYQGGVGSASLGYNYNRDGQQV 654

Query: 694 YYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEY 753
            YG+ GGV+AH+ G+TL QPL +++ ++ APGA+ A V N  GV  DW G AV+PY T Y
Sbjct: 655 NYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPY 714

Query: 754 RENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTH-NNKPLPFG 812
           RE  V+L +++L + VDLD A  NVVPTRGAIVRA F  RVG ++LM LT  N K +PFG
Sbjct: 715 RETEVSLRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFG 774

Query: 813 AMVT--SESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCIANYQLPPESQQQLL 870
           A  T    + +SS IV ++GQ+Y+SGMP  G +QV WG+++   C   + LP +     +
Sbjct: 775 ATATLLDTTKESSSIVGEDGQLYISGMPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGV 834

Query: 871 TQLSAECR 878
              +A CR
Sbjct: 835 VMANAVCR 842