Pairwise Alignments

Query, 878 a.a., fimbrial usher FimD from Escherichia coli Nissle 1917

Subject, 838 a.a., Outer membrane usher protein YraJ from Escherichia coli ECRC100

 Score =  577 bits (1488), Expect = e-169
 Identities = 324/843 (38%), Positives = 479/843 (56%), Gaps = 52/843 (6%)

Query: 43  SSAELYFNPRFLADDPQAV--ADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGD 100
           ++ E YF+P  L      +   DLSRF       PGTY+VDI+LN   ++ + +TF T +
Sbjct: 39  NAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITF-TAN 97

Query: 101 SEQGIVPCLTRAQLASMGLNMASVAGMNLLADDACV-PLTTMVQDATAHLDVGQQRLNLT 159
           +EQ + P  T  QL  +G+ +  +  +    DD+ +  L  ++    A  D   QRLNL+
Sbjct: 98  AEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLS 157

Query: 160 IPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGA 219
           IPQ  +   ARGY+ P  WD GI     NY+F+G+  + R G  S   YLN+Q+G N G 
Sbjct: 158 IPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGP 217

Query: 220 WRLRDNTTWSYNSSDRSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFR 279
           WRLR+ +TW+ N    S      W  I+++L+RDI  L+S+L LG+  T G IF   NF 
Sbjct: 218 WRLRNYSTWTRNDQASS------WNTISSYLQRDIKALKSQLLLGESATSGSIFSSYNFT 271

Query: 280 GAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAG 339
           G QLASDDNMLP+SQRGFAP + GIA  +A VTI+QNGY IY S VP G F IND+Y + 
Sbjct: 272 GVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSS 331

Query: 340 NSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRS-GNAQQEKPRFFQS 398
           NSGDL+VTI+E+DG+ + F  PYSS+P++QR GH +YS TAG YR+  N+  ++P F ++
Sbjct: 332 NSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEA 391

Query: 399 TLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQS 458
           T ++GL   +T+YGG   ++ Y A   GIG  +GALGALS+D+ +A++   +     G  
Sbjct: 392 TAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQ 451

Query: 459 VRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDY 518
            R  Y K + E+ TNI +  YRY+  GYF+F D   +R   YN                 
Sbjct: 452 WRTQYIKDIPETNTNIAVSYYRYTNDGYFSF-DEANTRNWDYN----------------- 493

Query: 519 YNLAYNKRGKLQLTVTQQLGRSSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLS 578
                 ++ ++Q  ++Q +    +LY SGS Q YWG +  +     G++     I ++L+
Sbjct: 494 ----SRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLN 549

Query: 579 YSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVY 638
           Y  ++    +  D+ L+LN++IP   WL          +  SY M+   +    +   + 
Sbjct: 550 YQYSRYT-DQNNDRALSLNLSIPLERWL--------PRSRVSYQMTSQKDRPTQHEMRLD 600

Query: 639 GTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVS 698
           G+LL+D  LSYS++       + NS        +YR  YG  + GYS+ +D  Q  YGV+
Sbjct: 601 GSLLDDGRLSYSLEQSLDDDNNHNSS----VNASYRSPYGTFSAGYSYGNDSSQYNYGVT 656

Query: 699 GGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRV 758
           GGV+ H +GVTL Q L +   L+ A GA   +++N  G+ TD  GYAV+PY T Y+ENR+
Sbjct: 657 GGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRL 716

Query: 759 ALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLT-HNNKPLPFGAMVTS 817
           ++DT  L DNVDL+     VVP RGA+V A F A +G ++L+T++  N KPLPFGA+ ++
Sbjct: 717 SVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASN 776

Query: 818 ESSQSSGIVADNGQVYLSGMPLAGKVQ---VKWGEEENAHCIANYQLPPESQQQLLTQLS 874
           + +    IV + G +YLSG  ++ K Q   V+WG + +  C   +  P       + Q +
Sbjct: 777 DDTGQQSIVDEGGILYLSG--ISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGT 834

Query: 875 AEC 877
           A+C
Sbjct: 835 AQC 837