Pairwise Alignments

Query, 327 a.a., TRAP transporter substrate-binding protein from Escherichia coli Nissle 1917

Subject, 328 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  135 bits (339), Expect = 2e-36
 Identities = 89/327 (27%), Positives = 159/327 (48%), Gaps = 5/327 (1%)

Query: 4   LRPLTASLMLLTSCLLISNTTLAKTTLKLSHNQDKSHAVHKALSYLADKTKEYSNGELVI 63
           LR +T +L +       S ++LA  +L+  +   ++ + H A     D  +E + GEL +
Sbjct: 3   LRSVTYALFI-AGLAAFSTSSLAAQSLRFGYETSQTDSQHIAAKKFNDLLQERTKGELKL 61

Query: 64  RIYPNATLGNERESLELMNSGALQMVKVNAASLESFAPDYSLFSLPFLFRDRDHYYRVLQ 123
           +++P++TLGN +  +  +  G + M    + +    +P  +L  +PFLFRD  H ++ L 
Sbjct: 62  KLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTLD 121

Query: 124 SDLGKKILNSSESKGFVGITYYDGGARSFYSNK-PITKPEDLAGMKIRVQQSPSAIAMMK 182
             +G  +  S E KG   + Y++ G R   +++ P+  P DL G+KIR   SP  IA  K
Sbjct: 122 GKVGDDLKASLEGKGLKVLAYWENGWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAFK 181

Query: 183 ALGGVATPMAQGELYTALQQGVVDGGENNTVVYADMRHAEVAKVYSRDEHTMVPDVLIIS 242
             G    PM   E+YT L+   +D  E+   V    +  EV K  S   H   P +++I+
Sbjct: 182 VFGANPIPMPFAEVYTGLETRTIDAQEHPINVVWSAKFFEVQKFLSLTHHAYSPLLVVIN 241

Query: 243 TDVLNKLGDKERTALLKAADESMMQMKDVIWPAAEKEAYDKMKGMNATVV-DVDKSAFKE 301
               + L  + + AL+ +A E+    + ++    +++  D MK     V+ D+D+ AF +
Sbjct: 242 KAKFDGLSPEFQQALVSSAQEAGNYQRKLV-AEDQQKIIDGMKEAGVEVITDLDRKAFSD 300

Query: 302 RVKPLYDEFKAKDA-QSAKNLELVESM 327
            +     +   KD  Q A  L+ V+ +
Sbjct: 301 ALGNQVRDMFVKDVPQGADLLKAVDEV 327