Pairwise Alignments

Query, 537 a.a., murein tripeptide ABC transporter substrate-binding protein MppA from Escherichia coli Nissle 1917

Subject, 535 a.a., predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  404 bits (1038), Expect = e-117
 Identities = 222/529 (41%), Positives = 310/529 (58%), Gaps = 6/529 (1%)

Query: 13  LVSSISLS--YAAEVPSGTVLAEKQELVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLV 70
           LVS +S +  YAA+VP+ T LA +Q    +   +P +LDP K       Q++ DLFEGLV
Sbjct: 9   LVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLV 68

Query: 71  NQNEKGEIVPGVATQWKSNDN-RIWTFTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLS 129
             + +G++ P  A +W+  D  + + F LR   +W+DG P+TA+DFV  WQR VDPKT S
Sbjct: 69  WMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTAS 128

Query: 130 PFAWFAALAGINNAQAIIDGKAAPDQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPV 189
           PFA + A A INNA AI+ GKA    LGV A D  TL++ L++P+PWF  + A    FPV
Sbjct: 129 PFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTMLAWPTLFPV 188

Query: 190 QKANV-ESSKEWTKPGNLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLPIN 248
               + +    W+KP N++ NGA+VL + VVNEK+    N  Y D   TVLQ+V +L ++
Sbjct: 189 PHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQQVEYLALD 248

Query: 249 QESAATKRFLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTADQR 308
                  R+ AG++D+T   P      + K +PG++   P+L + YY FN +K P  D R
Sbjct: 249 NSVTGYNRYRAGEVDLTW-VPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEKPPFNDVR 307

Query: 309 VRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLL 368
           VR AL +T+DR+L+ +KVLG    PA   TP    GF+       Q    E  A AK LL
Sbjct: 308 VRRALYLTVDRQLIAQKVLGL-RTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKALL 366

Query: 369 SAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGN 428
             AGY    PL+  L YN  + H+K AIA++S WKK LG  V L+  EWKTY+D+R  G+
Sbjct: 367 KQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLDARRAGD 426

Query: 429 FDVIRASWVGDYNEPSTFLTLLTSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNA 488
           F + R SW   YN+ S+FL  L S    N+  + N  YD +L QA+       RNA Y  
Sbjct: 427 FMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKRNALYQQ 486

Query: 489 AEKILMEQAPIAPIYQYTNGRLIKPWLKGYPINNPEDVAYSRTMYIVKH 537
           AE I+ +QAP+ PIY     +L+KP++ G+P++NP+D  YS+ +YI  H
Sbjct: 487 AEVIINQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH 535