Pairwise Alignments

Query, 537 a.a., murein tripeptide ABC transporter substrate-binding protein MppA from Escherichia coli Nissle 1917

Subject, 516 a.a., D-ala-D-a la transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  166 bits (421), Expect = 2e-45
 Identities = 144/520 (27%), Positives = 228/520 (43%), Gaps = 44/520 (8%)

Query: 17  ISLSYAAEVPSGTVLAEKQELVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLVNQNEKG 76
           ++L  A   P       K  LV     +P +LDPA  +   +  V    ++ LV     G
Sbjct: 12  LALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDG 71

Query: 77  E-----IVPGVATQWK-SNDNRIWTFTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSP 130
           +     +   +A+ WK S+D + WTFTL+DNAK+ADGTPVTA+    S++RL+       
Sbjct: 72  DKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLK------ 125

Query: 131 FAWFAALAGINNAQAIIDGKAAPDQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPVQ 190
                    I    A    +A P  L + A D HT+K  L +P   F+   AN     + 
Sbjct: 126 ---------IGQGPA----EAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIIN 172

Query: 191 KANVESSKEWTKPG----NLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLP 246
            A ++        G    N  G+G ++LK     ++LV+VPN HY  N K   ++V+   
Sbjct: 173 PAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGN-KPNFKRVSVKI 231

Query: 247 INQESAATKRFLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTAD 306
           I + ++   +   GDIDI ++ P +    L ++    V   P L   Y   N  K P   
Sbjct: 232 IGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQ 291

Query: 307 QRVRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKT 366
             +R A+S + D + M   +L    K      P+   G+    +   Q + +E  A+A+ 
Sbjct: 292 ADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGY---DATAMQYNHDETKAKAEW 348

Query: 367 LLSAAGYGPQKPLKLTLLYNTSE-NHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRN 425
                     KP  LT LY+ ++ N + IA+A  S   K LG+ VKL+     T  D   
Sbjct: 349 -----DKVTSKPTSLTFLYSDNDPNWEPIALATQSSLNK-LGIIVKLEKLANATMRDRVG 402

Query: 426 TGNFDVIRASWVGDYNEPSTFLTLLTSTHS----GNISRFNNPAYDKVLAQASTENTVKA 481
            G++D+   +W  D+ +P  F+     +      GN S + N   DK+L  A        
Sbjct: 403 KGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQ 462

Query: 482 RNADYNAAEKILMEQAPIAPIYQYTNGRLIKPWLKGYPIN 521
           R  DY  A+KI+++ A    ++Q      +   +KG+  N
Sbjct: 463 RTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFN 502