Pairwise Alignments

Query, 720 a.a., DNA helicase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 729 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  899 bits (2324), Expect = 0.0
 Identities = 454/726 (62%), Positives = 570/726 (78%), Gaps = 7/726 (0%)

Query: 2   DVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61
           D+S LL+SLND QR+AVAAP    LVLAGAGSGKTRVLVHRIAWL  VE  S +SI++VT
Sbjct: 4   DLSLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSILSVT 63

Query: 62  FTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLR 121
           FTNKAAAEMR RI QL+  +  GMWVGTFHGLAHRLLRAH  +A L Q+FQILDS+DQ R
Sbjct: 64  FTNKAAAEMRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDDQQR 123

Query: 122 LLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEAC 181
           L+KR+I+ + LDE++WP RQA W+IN+QKDEGLRP +IQ  G+    T  K+Y+AY+EAC
Sbjct: 124 LVKRVIRELGLDEQRWPARQAQWWINAQKDEGLRPRNIQPGGDLFLATQLKIYEAYEEAC 183

Query: 182 DRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTG 241
            RAG++DF+ELLLRA +LW + P +L+HY+ RF ++LVDEFQDTN +QYAW+RLLA    
Sbjct: 184 ARAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAKGGE 243

Query: 242 KVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNN 301
            +M+VGDDDQSIYGWRGA++EN+ +F  DFP AETIRLEQNYRST+ IL AANALI NN 
Sbjct: 244 SLMVVGDDDQSIYGWRGARIENLHQFSQDFPDAETIRLEQNYRSTACILKAANALIANNQ 303

Query: 302 GRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSR 361
           GRLGK+LWT G +GEPISLY AFNE DEAR+VV  I+    +G + +E AILYRSNAQSR
Sbjct: 304 GRLGKELWTSGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGMSRSEIAILYRSNAQSR 363

Query: 362 VLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDR 421
           VLEEALL+  +PYRIYGG RFFER EIK+A++YLRLI  R++DAA ERV+N P RGIG++
Sbjct: 364 VLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGIGEK 423

Query: 422 TLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQT 481
           T++ +RQ +R++ L++W A  + +  KA++GRAASAL  F+EL+D LA +   M LH   
Sbjct: 424 TVECLRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVEGMQLHNMA 483

Query: 482 DRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQF-SYNEEDEDLM-PLQAFLSHAA 539
             VI+ SGL   +  EKGEK Q R+ENLEELV+A R F SY+EED+D+  PL AFL HA+
Sbjct: 484 QLVIEQSGLLAYHRDEKGEKAQARVENLEELVSAARAFDSYSEEDDDIQSPLAAFLDHAS 543

Query: 540 LEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLA 599
           LEAGE QA   +D+VQLMT+HSAKGLEFP VF+VGMEEG+FP +MSL+E GRLEEERRLA
Sbjct: 544 LEAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEERRLA 603

Query: 600 YVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRM 659
           YVG+TRAMQ+L +TYAETRRLYG E Y++ SRF+ E+P   V+EVRL  TV+R  + + M
Sbjct: 604 YVGITRAMQQLVITYAETRRLYGSETYNKISRFVREIPPALVQEVRLSNTVTRSFNGKSM 663

Query: 660 GTPMVENDSG-----YKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAY 714
               + + +G     + LGQRVRH+ FGEGTI+N EGSG  +R+QV F+ +G KWL+ +Y
Sbjct: 664 SGSSLFDGAGVPETPFSLGQRVRHSLFGEGTILNFEGSGAQARVQVNFEDEGSKWLMLSY 723

Query: 715 ARLESV 720
           A+LE++
Sbjct: 724 AKLEAL 729