Pairwise Alignments

Query, 720 a.a., DNA helicase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  472 bits (1214), Expect = e-137
 Identities = 283/695 (40%), Positives = 399/695 (57%), Gaps = 74/695 (10%)

Query: 7   LDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKA 66
           +  LN +QREAV A    +LVLAGAG+GKTRVL  RIA ++S     P  I+AVTFTNKA
Sbjct: 44  VSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKA 103

Query: 67  AAEMRHRIGQLMGTSQGGM-WVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKR 125
           A EM+ RIG L+G +  GM W+GTFH +  +LLR H     L  DF ILD++D +RL+K+
Sbjct: 104 AREMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ 163

Query: 126 LIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHI-----QSYGNPVEQTWQKVYQAYQEA 180
           LI+A  LD+K+WP +Q    I++ K++GL P  I     +++ N      +++Y AYQ  
Sbjct: 164 LIQAEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIPEGDARAFANG---KGRELYAAYQNR 220

Query: 181 CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLA--- 237
                  DF +LLL    ++   P +L+ Y  +F  ILVDE+QDTN  QY W+RLLA   
Sbjct: 221 LLTLNACDFGDLLLHPIRMFRANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQT 280

Query: 238 -------------------GDTGK-------------------------VMIVGDDDQSI 253
                              G+ G+                         +  VGDDDQSI
Sbjct: 281 QASRNRPSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSI 340

Query: 254 YGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTD-- 311
           YGWRGA+V+NI RF  DFPGA+ I+LE+NYRST +IL AA  LI +N GRLGK L+T+  
Sbjct: 341 YGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERT 400

Query: 312 GADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQAS 371
             D E + ++ A++  +EAR +   I+  Q     L + +IL R++ Q R  E+  +   
Sbjct: 401 NPDDEKVHVHAAWDSEEEARAIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLG 460

Query: 372 MPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSR 431
           + YR+ GG RF+ER EI+DA++Y RL+    DD AFER+VNTP RG+G+ T+  +   +R
Sbjct: 461 LNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYAR 520

Query: 432 DRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQET--ADMPLHVQTDRVIKDSG 489
            R + +  A  ++++   L  +A   L  F  + D    +T     P     +R++ +SG
Sbjct: 521 ARDIPMLAAASDIVETDELKPKARKGL--FDVVADFRRWQTLLETTPHTELAERILDESG 578

Query: 490 LRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADT 549
              M++ +K  +   R+ENL+EL+ +   F           ++ FL H AL     Q + 
Sbjct: 579 YTAMWQADKSAEAPGRLENLKELIRSMEAFE---------SMRGFLEHVALVMDAEQNEN 629

Query: 550 WQDAVQLMTMHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGR--LEEERRLAYVGVTRAM 607
             DAV +MT+HSAKGLEF  VF+ G EEG+FP Q +LDEGGR  LEEERRLAYVG+TRA 
Sbjct: 630 -MDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAK 688

Query: 608 QKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVE 642
           ++  + +   RR++G      PSRF+ ELP   VE
Sbjct: 689 RRCHIWFVSNRRIHGLWQSTLPSRFLDELPIAHVE 723



 Score = 29.6 bits (65), Expect = 7e-04
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 668 SGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIK 708
           S + +G RV H KFG G I  +EG    ++L + F   G K
Sbjct: 811 SRFNVGDRVFHIKFGNGNIAAIEG----NKLTIDFDRAGQK 847