Pairwise Alignments

Query, 720 a.a., DNA helicase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  510 bits (1313), Expect = e-148
 Identities = 305/760 (40%), Positives = 431/760 (56%), Gaps = 71/760 (9%)

Query: 7   LDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKA 66
           L  LN +QR AV      +LVL+GAG+GKTRVL  R+A +++     P+ ++AVTFTN+A
Sbjct: 25  LAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRA 84

Query: 67  AAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRL 126
           A EMR R G ++G     +W+GTFH L  R+LR H     L   F ILD++DQLRLLK++
Sbjct: 85  AREMRERAGAMIGPMAEQVWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQI 144

Query: 127 IKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQK---VYQAYQEACDR 183
           ++A  +D K+W P+  M  I   KD+GL P  + +     E    +   +Y+ YQ+    
Sbjct: 145 LEAEGIDTKKWTPQAGMGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQRLAV 204

Query: 184 AGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKV 243
               DF +LLL    ++   P +L  Y + F  ILVDE+QDTN  QY W+RLLA   G +
Sbjct: 205 VNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQYLWLRLLARGHGNI 264

Query: 244 MIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGR 303
             VGDDDQSIY WRGA+V NI RF  DFPGA  +RLE+NYRST  IL+AA+ LI +N GR
Sbjct: 265 CCVGDDDQSIYSWRGAEVGNILRFEADFPGATVVRLERNYRSTPTILAAASGLIRHNKGR 324

Query: 304 LGKKLWTDGAD--GEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSR 361
           LGK L     D  G+ + +   ++  +EAR VV+ I+T Q  G  L   A+L R+  Q+R
Sbjct: 325 LGKDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDIETRQRAGDRLNGMAVLVRAGFQTR 384

Query: 362 VLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDR 421
             EE L+ A +PYR+ GG RF+ERQEI+DA++YLRL+A  +D  AFER++N P RG+GD 
Sbjct: 385 AFEERLILAGVPYRVVGGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLPRRGLGDA 444

Query: 422 TLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFME-------LIDALAQETAD 474
           +L  + + SR   ++L +A RE ++   L  +A  AL+ F++       L DA+A +   
Sbjct: 445 SLQTLMRASRMASISLMRAAREAIETDELRPQARKALRAFLDDMGRWRSLADAMAPDEL- 503

Query: 475 MPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAF 534
                    V+ +SG   M+ ++K    Q R+ENL+ELV+A ++F           L AF
Sbjct: 504 ------CGTVLDESGYLEMWRKDKSPDAQGRVENLKELVSALKEFE---------SLGAF 548

Query: 535 LSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG--RL 592
           L H +L   + +A   +DAV LMT+H+AKGLEF  VF+ G EE +FP + +LDE G   L
Sbjct: 549 LEHVSL-VMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALDENGAEAL 607

Query: 593 EEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEE--------V 644
           EEERRLAYVG+TRA ++  +++   RR+Y +     PSRFI ELP E VE          
Sbjct: 608 EEERRLAYVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVERDSASGVYGS 667

Query: 645 RLRATVSRPVSHQRMGTP----------------------------MVENDSGYKLGQRV 676
             +     P    R+G P                              ++    + G RV
Sbjct: 668 GAQGYADAPGGWGRLGGPGSWGGGWGNAAPARVPAAGDTPWQTRDRSGDDQPSLRPGDRV 727

Query: 677 RHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYAR 716
            H KFG GT++    + +  RL++ F   GIK ++  + R
Sbjct: 728 FHDKFGGGTVL----AADQGRLEIDFDKAGIKKVMGGFVR 763