Pairwise Alignments

Query, 720 a.a., DNA helicase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score =  463 bits (1191), Expect = e-134
 Identities = 294/740 (39%), Positives = 412/740 (55%), Gaps = 40/740 (5%)

Query: 6   LLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNK 65
           LLD LN +QR+AV    S LL++AGAGSGKT VL  RIA+LM+        I+A+TFTNK
Sbjct: 19  LLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNK 78

Query: 66  AAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH-MDANLPQDFQILDSEDQLRLLK 124
           AAAEMR R+  L+G     MWV TFH    R+LR    +   L  +F I D++D  RLL+
Sbjct: 79  AAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQ 138

Query: 125 RLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHH----IQSYGNPVEQTWQKVYQAYQEA 180
            + + + LD K++ PR     I++ K+E + PH     +    + + +    VY  YQ  
Sbjct: 139 MVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQRR 198

Query: 181 CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAG-- 238
              A  +DF +L+     +    P I Q+YR RF ++LVDE+QDTN+ QY  +R L G  
Sbjct: 199 LRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRD 258

Query: 239 -----DTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAA 293
                  G++ +VGD DQSIY +RGA + NI+ F  D+P   TI LEQNYRST NILSAA
Sbjct: 259 SNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAA 318

Query: 294 NALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGG-ALAECAI 352
           N++I  N GR  K+LWTD   GE I  Y A NE DEARFV   I    +       + A+
Sbjct: 319 NSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAV 378

Query: 353 LYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVN 412
            YR+N  SR LEE L++A +PY++ GG+RF+ER+EI+D ++YLR++ N  D  +  R++N
Sbjct: 379 FYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILN 438

Query: 413 TPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKA--LAGRAASALQRFMELIDALAQ 470
           TP RGIGDR    V   + +  +    A     Q K   L  RA  A+  F+E+ D L +
Sbjct: 439 TPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDEL-R 497

Query: 471 ETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEE------ 524
              D  L    + V++ +G R   E     +   R++NL ELV+   +FS + E      
Sbjct: 498 GRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFSTDRENAAALG 557

Query: 525 --DEDLMP---LQAFLSHAALEAGEGQ-ADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEG 578
             DED+     L  FL   +L A   +  +     V LMT+H+AKGLEFP VF+ G E+G
Sbjct: 558 PDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDG 617

Query: 579 MFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPE 638
           MFP   +LD    L EERRLAYVG+TRA Q+L ++ A  R  +G+ + +  SRF+ E+P+
Sbjct: 618 MFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQ 677

Query: 639 ECVEEVRL--RATVSRPVSHQ-RMGTPMVE-NDSG--------YKLGQRVRHAKFGEGTI 686
           E ++  R   + + S PVS   R G+       SG         ++G RV H K+G G +
Sbjct: 678 ELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRV 737

Query: 687 VNMEGSGEHSRLQVAFQGQG 706
             + G GE +   + F   G
Sbjct: 738 EEVSGVGESAMSLIDFGSSG 757