Pairwise Alignments

Query, 720 a.a., DNA helicase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 721 a.a., UvrD/REP helicase from Marinobacter adhaerens HP15

 Score =  863 bits (2230), Expect = 0.0
 Identities = 423/724 (58%), Positives = 550/724 (75%), Gaps = 9/724 (1%)

Query: 1   MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV 60
           MDVS+++D LND QREAV A   +LLVLAGAGSGKTRVLVHRIAWLM+V+   P  I+AV
Sbjct: 1   MDVSHIIDPLNDAQREAVTAQNDHLLVLAGAGSGKTRVLVHRIAWLMTVDRVPPTGILAV 60

Query: 61  TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL 120
           TFTNKAA EMR+RI Q+M     G+W GTFHG+AHRLLR+H  DA LP++FQ+LDS+DQL
Sbjct: 61  TFTNKAAKEMRYRIEQMMDIPARGLWFGTFHGIAHRLLRSHWKDAGLPENFQVLDSDDQL 120

Query: 121 RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSY-GNPVEQTWQKVYQAYQE 179
           RL+KR+++   +DE +WPP+QA W+I+SQKDEGLR  HIQ   G+       K+Y+ Y++
Sbjct: 121 RLIKRVMRENQIDESKWPPKQAQWFISSQKDEGLRVDHIQENPGDHFLSIMLKIYRQYEK 180

Query: 180 ACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGD 239
            C + GLVDF ELLLR+HELWL++P +L HY+ RF +ILVDEFQDTN IQYAW+++LA +
Sbjct: 181 LCQQGGLVDFGELLLRSHELWLHRPELLAHYQSRFQHILVDEFQDTNTIQYAWLQVLASN 240

Query: 240 TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIEN 299
              + +VGDDDQSIYGWRGA+VENIQ++  DFP A  +RLEQNYRST  IL AANA+I N
Sbjct: 241 RVPMTVVGDDDQSIYGWRGAKVENIQQYQRDFPNARLVRLEQNYRSTQMILKAANAVIAN 300

Query: 300 NNGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQ 359
           N GRLGK+LWTDG +GEPISLY AFNE DEA ++ + I  W  +G   +E AILYRSNAQ
Sbjct: 301 NQGRLGKELWTDGPEGEPISLYAAFNEQDEANYIADSISAWVQDGNLRSESAILYRSNAQ 360

Query: 360 SRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIG 419
           SRVLEE+L++  +PYR+YGG+RF++RQEI++AL+YLRL+  R DDAAFERVVN P RGIG
Sbjct: 361 SRVLEESLMRQGIPYRVYGGLRFYDRQEIRNALAYLRLVQYRRDDAAFERVVNVPPRGIG 420

Query: 420 DRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHV 479
            ++L  +R+ + ++ ++LW++   LL    + GRA + LQ F+ +I+ L++   D  LH 
Sbjct: 421 AKSLAELREYATEQSISLWESAERLLDAGQVKGRAKTGLQSFIAIIEGLSEMVGDASLHG 480

Query: 480 QTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAA 539
              + I++SGL+  +  EKGEKGQ R+ENLEELV A   +   E ++ +  L  F++ AA
Sbjct: 481 LMKQTIENSGLKDYHASEKGEKGQARVENLEELVNALSDY---EVEDGVDALSEFIAQAA 537

Query: 540 LEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLA 599
           L+AGE QA   +D+VQLMT+HSAKGLEFP VF+ G+EEG+FP  MSL+E GR+EEERRLA
Sbjct: 538 LDAGESQAGDHEDSVQLMTLHSAKGLEFPLVFLAGVEEGLFPHGMSLEEPGRMEEERRLA 597

Query: 600 YVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRM 659
           YVG+TRAM+KL LTYAE+RRLYG+E ++  SRF+ E+P +C++EVRLR TV+RP   +R 
Sbjct: 598 YVGITRAMKKLVLTYAESRRLYGQEKFNALSRFVREIPGDCLQEVRLRNTVTRPAMVERP 657

Query: 660 GTPMVEND----SGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYA 715
              M   D    SG+ LGQRVRH KFGEG ++N EG+G H+R+QV F  +G KWLV AYA
Sbjct: 658 NESMFSQDSAQQSGFSLGQRVRHPKFGEGIVMNSEGTGHHTRVQVNFD-EGAKWLVLAYA 716

Query: 716 RLES 719
            LE+
Sbjct: 717 PLEA 720