Pairwise Alignments

Query, 611 a.a., ATP-dependent DNA helicase RecQ from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  715 bits (1845), Expect = 0.0
 Identities = 352/592 (59%), Positives = 446/592 (75%), Gaps = 3/592 (0%)

Query: 19  LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
           L + FGY+ FR GQ E+I+ V  G DCLV+MPTGGGKSLCYQ+PAL+++G+T+VVSPLIS
Sbjct: 17  LAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLIS 76

Query: 79  LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA 138
           LMKDQVD L   GV AA LNS+Q RE  LEV+     G+++LLY++PERL+  +F+E + 
Sbjct: 77  LMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLTADFIERMQ 136

Query: 139 HWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLL 198
                + A+DEAHCISQWGHDFRPEYAALGQL+Q FP +P MALTATAD  TRQ+I   L
Sbjct: 137 SLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICERL 196

Query: 199 GLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARL 258
           G+N P   +SSFDRPNIRY + EK    +QL +++ +Q G SGIIYC+SR +V++ A RL
Sbjct: 197 GIN-PFKLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIIYCSSRRRVDEVAERL 255

Query: 259 QSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 318
             +G  A AYHAG+    R +VQ+ F +D + IVVATVAFGMGINK NVRFVVH+DIP++
Sbjct: 256 TLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKS 315

Query: 319 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAE 378
           IE+YYQETGRAGRDGL AEA + +DPAD+  +R  +E+   G  Q +E HKLN M AFAE
Sbjct: 316 IEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNTMAAFAE 375

Query: 379 AQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVV 438
           AQTCRR VLL+YF E   EPCGNCDICLDPPK+Y+GS DAQ  LS I R+ QRFG+ +++
Sbjct: 376 AQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLSCIYRLGQRFGINHLI 435

Query: 439 EVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTE 498
           EV+RG+    I D GHDKL  +G+G+DKSHE+W+SVIRQLIHLGL +Q+I + S++ L  
Sbjct: 436 EVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQDITRGSSITLNP 495

Query: 499 AARPVLRGESSLQLAVPRI--VALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPP 556
           +ARP+L+GE +L LA PRI   ++K K  Q     NYDRKLFA+L+ LR+ IA+E +VPP
Sbjct: 496 SARPILKGEVALMLAEPRIQLTSIKRKTTQSRVPLNYDRKLFARLKTLRREIAEEQDVPP 555

Query: 557 YVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGD 608
           Y+VFNDATL EMA  MP +  EML+VNGVG RKL RFG  F+  I A++ G+
Sbjct: 556 YLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLDEIAAYLAGE 607