Pairwise Alignments

Query, 928 a.a., DNA polymerase I from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  708 bits (1827), Expect = 0.0
 Identities = 418/963 (43%), Positives = 587/963 (60%), Gaps = 59/963 (6%)

Query: 7   NPLILVDGSSYLYRAYHAF--PPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDA 64
           N L L+D  + +YRAY+AF   P  NS G  T A+ G +N L  ++ +  P+H  V FD 
Sbjct: 5   NKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKENPSHIGVAFDP 64

Query: 65  KGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLARE 124
            G TFR E FE YK+ R   P+ +R  +  +  ++ A  +P+L V+G EADDVIGTLA E
Sbjct: 65  SGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLATE 124

Query: 125 AEKAGRPVLISTGDKDMAQLVTPNITLI---NTMTNTILGPEEVVNKYGVP-PELIIDFL 180
           A + G    + T DKD  QLVT N+ +    +T    ++G EEV  K+ +  P  +ID L
Sbjct: 125 AGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVIDML 184

Query: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240
            LMGD+SDNIPG PGVGEKTAQ L+   G ++ L    +++ G        +  K+E NK
Sbjct: 185 GLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKG-------ALKTKVETNK 237

Query: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADV-----EAGK 295
           E+   S  LATIK DV ++L  ++L  +Q   + L  +F++ EF+     V      AG 
Sbjct: 238 ELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSAGG 297

Query: 296 WLQAKGAKPAAKPQETSVADEAPEVTATVIS--YDNYV---------------------- 331
              A G+K A      S     PE    +    + N+                       
Sbjct: 298 VTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLNCDY 357

Query: 332 TILDEETLKAWIA-KLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390
            ++D E  +A I  KL  + + + DTET   + + A LVG+SF+I    A Y+PV     
Sbjct: 358 QLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPV----- 412

Query: 391 DAPDQISRERALELL---KPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESY 447
             PD  +RE AL+++   +P+ E+E +LKVGQN+KYD  +L NYG++++G  FDTM+  Y
Sbjct: 413 --PD--NREEALKIVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTMIAHY 468

Query: 448 ILNSVAGRHDMDSLAERWLKHKTITFEEIAG-KGKNQLTFNQIALEEAGRYAAEDADVTL 506
           +L     RH MD LAE +L ++TI  +E+ G KGKNQ     +  ++  RYA EDADVTL
Sbjct: 469 VLQPEL-RHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYACEDADVTL 527

Query: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566
           +L   +  +L+++     +F +IEMPLVPVL  IERNGV +D + L   S   T ++  +
Sbjct: 528 KLKNVLEKELKENDAE-RLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRI 586

Query: 567 EKKAHEIAGEEFNLSSTKQLQTILFEK-QGIKPLKKTPGGAPSTSEEVLEELALDYPLPK 625
           E++ +E+AGE FN++S KQ+  +LF+K + I+  KKT  G   TSEEVLE L   +P+ +
Sbjct: 587 EQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVE 646

Query: 626 VILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEE 685
            ILE+RGL KL  TY D LP +INP+T RVHTS++Q VT+TGRLSS++PNLQNIP+R+E 
Sbjct: 647 KILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQNIPIRDEN 706

Query: 686 GRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 745
           G+ IR+AFI  E  +  SADYSQIELRIMAHLS DK ++ AF    DIH ATAA+++ + 
Sbjct: 707 GKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKID 766

Query: 746 LETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERT 805
           L+ V S+ RR AK  NFG+IYG+S FGLA ++N+ RKEA++ +D YFE YP V  YME++
Sbjct: 767 LKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMEKS 826

Query: 806 RAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDA 865
              A+E+GYVET+  R+ +LPDI S N   R  AER AINAP+QG+AADIIK AM  +  
Sbjct: 827 IQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQ 886

Query: 866 WLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWD 925
             Q E  + +MI+QVHDEL F V  ++ + V + + + ME+  R+ VPL  + G G+NW 
Sbjct: 887 RFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHAYRMHVPLKADCGWGKNWL 946

Query: 926 QAH 928
           +AH
Sbjct: 947 EAH 949