Pairwise Alignments

Query, 273 a.a., Ribosomal RNA small subunit methyltransferase A from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 264 a.a., dimethyladenosine transferase from Pseudomonas stutzeri RCH2

 Score =  250 bits (638), Expect = 3e-71
 Identities = 129/260 (49%), Positives = 171/260 (65%), Gaps = 1/260 (0%)

Query: 9   HLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD 68
           H ARKRFGQNFL+D  VI  I+ AI+ + G+ +VEIGPG  ALTE + +    L V+ELD
Sbjct: 6   HRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLDSGAHLDVVELD 65

Query: 69  RDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 128
            DL   LQ         T++Q DA+ F+F  L+ +    LR+ GNLPYNISTPL+FHL +
Sbjct: 66  LDLIPILQGKFAERDNFTLHQGDALKFDFSRLSAEPNS-LRIVGNLPYNISTPLIFHLLA 124

Query: 129 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 188
           +   I DMHFMLQKEVV RL A P    +GRLS+M QY+C V  +  V P AF P PKVD
Sbjct: 125 HAHLIRDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPAPKVD 184

Query: 189 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 248
           SA+VRLVPH T+PHP +D R L R+  EAFNQRRKT+RN+L  L   + +    +D ++R
Sbjct: 185 SAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDADAIAAADVDGSLR 244

Query: 249 AENISVAQYCQMANYLAENA 268
            E + +A + ++++ L E +
Sbjct: 245 PEQLDLAAFVRLSDQLTERS 264