Pairwise Alignments

Query, 968 a.a., RNA polymerase-associated protein RapA from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 953 a.a., RNA polymerase-associated protein RapA from Marinobacter adhaerens HP15

 Score =  772 bits (1993), Expect = 0.0
 Identities = 425/980 (43%), Positives = 592/980 (60%), Gaps = 52/980 (5%)

Query: 3   FTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTIT 62
           F +GQRW+S +++ LGLG V  +  R VTL FP+  E R YA  ++P++R+++  G+ I 
Sbjct: 6   FVIGQRWVSHSDTGLGLGIVTDISGRRVTLGFPAADEERTYAIDNAPLSRIIYQLGEEIE 65

Query: 63  SHDGWQMQVEEVKEENGLLTYIGTR-LDTEESGVALREVFLDSKLVFSKPQDRLFAGQID 121
           + DG +  V  V++  G+L Y G    D +E    + EV L   + FS P  RLFAGQ D
Sbjct: 66  TFDGERYTVRAVEDRGGVLLYHGDDGTDLQE----ISEVKLAGSVNFSAPHQRLFAGQFD 121

Query: 122 RMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGL 181
           R   F LR+   ++ +        GL G RT  +PHQ+ IAH+V RRHAPRVLLADEVGL
Sbjct: 122 RNGAFRLRFATLQHMNRLRASSAQGLIGARTQHLPHQIYIAHEVARRHAPRVLLADEVGL 181

Query: 182 GKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERY------ 235
           GKTIEAG+ILH QL +G A+R LI+VP++L HQWLVEMLRRFNLRF++ D  RY      
Sbjct: 182 GKTIEAGLILHYQLHTGRAKRALIVVPDSLTHQWLVEMLRRFNLRFSIVDQGRYDALKEQ 241

Query: 236 -----AEAQH-----DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHL 285
                A   H     DA NPF++EQLV+CSLDF ++S++  +   +A WDL++VDEAHHL
Sbjct: 242 ESDVDALVNHIFGDEDAVNPFESEQLVLCSLDFLKKSQKAQDDALKAHWDLMIVDEAHHL 301

Query: 286 VWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEE 345
            WS +  S EY+ +E+L+    G+LLLTATPEQ+G+ SHFARLRLLDP RFHD   F  E
Sbjct: 302 AWSPEEVSPEYRIVEELSAVSRGLLLLTATPEQVGIASHFARLRLLDPARFHDLETFRRE 361

Query: 346 QKNYRPVADAVAMLL-AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELV 404
           ++ Y  +   V  L    + +S  +  +L E +GE+ ++ L    N         RQ ++
Sbjct: 362 EQQYEAINSVVRRLQDESSDISEGDQKLLREWLGEE-LDQLFAGDNP--------RQSVI 412

Query: 405 SMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRA 464
             L+DRHGT RVLFRNTR  ++GFP+R      LP P  Y+   + SGI G         
Sbjct: 413 DALLDRHGTGRVLFRNTRAAIQGFPERRPDPEPLPCPAMYEG--QASGIQG--------- 461

Query: 465 RDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLR 524
              L PE++  E +     W   DPRVEWL   L   R  KV+VICA A TA+ LE  L+
Sbjct: 462 ---LTPEQLVPEEQ-----WLADDPRVEWLEKKLIGLRPAKVVVICASAQTAMALEHYLQ 513

Query: 525 EREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP 584
            R GIR+A FHE +S+IERDRAAA+FA+ + GAQ L+CSEIGSEGRNFQFA H+V+FDLP
Sbjct: 514 LRAGIRSAAFHEHLSLIERDRAAAYFADTEQGAQALICSEIGSEGRNFQFAHHLVLFDLP 573

Query: 585 FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644
            NPDLLEQRIGRLDRIGQ   I IHVPYL  T+Q V  RW+HEGL+AF  +C  G  + +
Sbjct: 574 ANPDLLEQRIGRLDRIGQTEAIDIHVPYLSGTSQEVQFRWFHEGLNAFAESCAVGVAVQE 633

Query: 645 SVYNGLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAE 704
           ++        A     +  D L++   ++   LK  L+ GRD L+E++S   E A+ L  
Sbjct: 634 ALQAQW--QQAIDGDLDVADGLVEASADEATRLKTLLQAGRDALIELNSCRPEVAEDLIA 691

Query: 705 SIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFD 764
           +IE+++ +  +  + M  FDI+G++ +D  D+  +L P +         L EDGIT+T+D
Sbjct: 692 AIEDEESEARVRDYMMEAFDILGVDVEDHADHSDILRPGEQYQAGHVAELPEDGITVTWD 751

Query: 765 REVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEA 824
           R+ AL RED  F++WEHP++   +D + S   G + ++ L  KALP GTLL+E ++ V  
Sbjct: 752 RQNALEREDLAFMSWEHPMVTGVMDSVTSSGLGKAALASLSVKALPPGTLLMEALFTVHC 811

Query: 825 QAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDV 884
            AP+ LQL R+LP +P+R+L+D NG  L+  +  +  N   + + R T   +V  ++  V
Sbjct: 812 PAPEALQLTRYLPVSPLRLLVDVNGKELSGALPHDRLNEMCSNIRRRTAQAIVPQIRPQV 871

Query: 885 HAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQ 944
             ++   E   E     L   A  + +     E+ RLEAL+ VNP IR++E+       +
Sbjct: 872 ETMVDHVERLSEPHLEPLKSQALEQLEASFGPEIRRLEALQKVNPAIREEEIDFFRDQFE 931

Query: 945 QVMESLDQAGWRLDALRLIV 964
              E++  A   L+ +R+IV
Sbjct: 932 AAKEAIGHASLALEGIRVIV 951