Pairwise Alignments

Query, 783 a.a., DNA polymerase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 791 a.a., DNA polymerase elongation subunit (family B) from Pseudomonas stutzeri RCH2

 Score = 1076 bits (2783), Expect = 0.0
 Identities = 530/783 (67%), Positives = 629/783 (80%), Gaps = 2/783 (0%)

Query: 3   QAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQG 62
           Q GFILTRHWRDTP GTE+SFWLATD+GP QV +  Q SVAF+P +Q   A+ +L+ E+ 
Sbjct: 9   QRGFILTRHWRDTPAGTEISFWLATDDGPRQVCVPHQHSVAFVPEEQHALAEPLLRRERD 68

Query: 63  FRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITS 122
             L PLAL DF  +PV GLYCR++R+L++  + LR+ GV VYEAD+RPPERYLMERFIT+
Sbjct: 69  AELRPLALCDFRHRPVMGLYCRSYRRLLDCARLLRDAGVDVYEADIRPPERYLMERFITA 128

Query: 123 PVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLG 182
           PV          +VN +LKP  DYRP L+ VS+DIETT  G+LY I LEGCGQR VYMLG
Sbjct: 129 PVSFTDAPAGRNLVNTQLKPASDYRPQLRLVSLDIETTARGDLYSIALEGCGQRQVYMLG 188

Query: 183 PENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRL 242
           PEN   +++DF LEY  SR +LLE+LNAWFA +DPD IIGWN+VQFDLR+L +H++R ++
Sbjct: 189 PENAQGTAVDFALEYCESRRELLERLNAWFAAHDPDAIIGWNLVQFDLRVLHEHSQRLQV 248

Query: 243 PLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLG 302
           PLRLGR   E+EWREHG +   FFA   GRLIIDGIEAL+SA W+F SFSLE VAQ LLG
Sbjct: 249 PLRLGRGGEEMEWREHGGRGNHFFAATAGRLIIDGIEALRSATWSFPSFSLENVAQTLLG 308

Query: 303 EGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLP 362
           EGK+IDNP+ RM EIDR FA+DKPALA YNLKDCELVT+IF  TE++ FLLERATV GL 
Sbjct: 309 EGKAIDNPYQRMAEIDRMFAQDKPALARYNLKDCELVTRIFAHTELLTFLLERATVTGLA 368

Query: 363 VDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKS 422
            DR GGSVAAF HLY P MHR G+VAPNLGE    ASPGG+VM+S+PGLY+SVLVLDYKS
Sbjct: 369 ADRSGGSVAAFEHLYMPLMHRQGFVAPNLGERQAEASPGGFVMNSQPGLYESVLVLDYKS 428

Query: 423 LYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKR 482
           LYPSIIRTFLIDPVGL+EG+  P+ E S  GF  A FSR +HCLP IV  +W GR+ AKR
Sbjct: 429 LYPSIIRTFLIDPVGLIEGLRHPNDESSIPGFRGARFSRTRHCLPAIVERVWEGRETAKR 488

Query: 483 QGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVI 542
           + NKPLSQALKIIMNAFYGVLG++ CRFFD RLASSIT+RGH+IMR+T+ LIEAQG+ VI
Sbjct: 489 EHNKPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITLRGHEIMRRTRELIEAQGHAVI 548

Query: 543 YGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQ-KQRLTSALELEYETHFCRF 601
           YGDTDSTFVWL+ AHS+ EAA IGR LVQH+N WW E LQ +  L SALEL+YETHF RF
Sbjct: 549 YGDTDSTFVWLRKAHSDGEAACIGRELVQHINDWWCEHLQVEYGLASALELQYETHFRRF 608

Query: 602 LMPTIRGADTGSKKRYAGLIQEGD-KQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE 660
           LMPTIRGA+ GSKKRYAGL+   D    MVFKGLETVRTDW+PLAQ+FQQELY RIF  +
Sbjct: 609 LMPTIRGAEEGSKKRYAGLVTRPDGSDGMVFKGLETVRTDWSPLAQRFQQELYQRIFHRQ 668

Query: 661 PYQEYVRQTIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPL 720
           P+++YVR+ + + +AGELD  L+YRKRLRR L +YQRNVPPHVRAARLADE N+++GRP 
Sbjct: 669 PHRDYVREYVRRTLAGELDDLLIYRKRLRRRLDDYQRNVPPHVRAARLADEFNERQGRPR 728

Query: 721 QYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQL 780
           QYQN G I Y+ T  GPEPL+ + S +DY+HY+TRQLQPVA+ ILPF+ D+FA+L+ GQL
Sbjct: 729 QYQNGGWISYLITVAGPEPLETRSSVIDYDHYVTRQLQPVADAILPFVGDDFASLVDGQL 788

Query: 781 GLF 783
           GLF
Sbjct: 789 GLF 791