Pairwise Alignments

Query, 275 a.a., Putative aliphatic sulfonates transport permease protein SsuC from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 292 a.a., ABC-type nitrate/sulfonate/bicarbonate transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  160 bits (404), Expect = 4e-44
 Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 19/263 (7%)

Query: 11  SRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVAALQLISPLFLPPSQQVLAKL---LTIAG 67
           SRR  W         L+   L++   VWW   AL L  P+F+P    VL ++    T  G
Sbjct: 43  SRRSAW--------LLTGAGLSLPFVVWWLWTALGLADPMFMPSPGAVLERIGRWWTSEG 94

Query: 68  PQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPVIELYRPVPP 127
             G +  ++W        R++    A+ +I +P+G+ +G    V+  L+P+ +  R +P 
Sbjct: 95  LLGDIGISVW--------RVMAGFGASALIALPLGLYIGTYRPVQAFLEPLTDFIRYMPA 146

Query: 128 LAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVL 187
           +A++PL+++W GI E SK+L+I++  F  + +     V+     +I AAQ++GA+R +++
Sbjct: 147 VAFIPLVMLWVGIDEGSKVLIIFIGTFFQMVLMVAEDVRRVPMAQIEAAQTMGANRGEIV 206

Query: 188 WFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIA 247
             VILP A P +L  LRI  G  W+ LV AEL+AA  GLG+ +  A  ++ TD + AGI 
Sbjct: 207 KLVILPSAKPALLDTLRITCGWAWTYLVVAELVAANSGLGYAILKAQRYMHTDKIFAGIL 266

Query: 248 VIAIIAFLLELGLRALQRRLTPW 270
           +I +I  L +   R L RR  PW
Sbjct: 267 LIGLIGLLTDQAFRWLHRRAFPW 289