Pairwise Alignments

Query, 315 a.a., Cytochrome bo(3) ubiquinol oxidase subunit 2 from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 316 a.a., ubiquinol oxidase, subunit II (RefSeq) from Shewanella loihica PV-4

 Score =  321 bits (823), Expect = 1e-92
 Identities = 152/282 (53%), Positives = 206/282 (73%), Gaps = 5/282 (1%)

Query: 1   MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAIL 60
           M +R + K+    S     ++L+GC   +LDPKGQ+G++++ LI+ A  LMLIVVIP I+
Sbjct: 1   MLIRNFAKA----SCAMAALMLAGCEGGVLDPKGQVGIDEKQLIVIATLLMLIVVIPVIV 56

Query: 61  MAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL 120
           M + FAWKYR       Y+P W+HS  +E VVW VPI+I+  L V+TW +TH L+P +PL
Sbjct: 57  MTLYFAWKYRDGRDHEIYAPKWAHSKTIELVVWCVPIVIVGILGVITWHSTHKLDPYQPL 116

Query: 121 AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLG 180
            H+ +PI +EVVS++WKW FIYPEQGIA+VNE+AFPAN PV FK++S++ MNSFFIP+LG
Sbjct: 117 EHEAEPIIVEVVSLNWKWLFIYPEQGIASVNELAFPANVPVNFKISSDTAMNSFFIPQLG 176

Query: 181 SQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAEFDQWVAKAKQ 240
           SQIY+MAGM T+LHLIANEPGTY GISA+YSG GF+GMKF AIATP R +F+ WVAK K+
Sbjct: 177 SQIYSMAGMTTKLHLIANEPGTYKGISANYSGAGFTGMKFNAIATPTRDDFNAWVAKVKR 236

Query: 241 SPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFM 282
               +    ++ +LA  S  N V Y+++V   LF  ++ ++M
Sbjct: 237 EGAALG-QESYRELAKESSNNPVSYYASVSDGLFEQIVMQYM 277