Pairwise Alignments

Query, 590 a.a., HTH-type transcriptional regulator SgrR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 587 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  171 bits (432), Expect = 1e-46
 Identities = 151/586 (25%), Positives = 245/586 (41%), Gaps = 34/586 (5%)

Query: 28  LNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGK 87
           LN L  Y RL     G     T+ ELAER F S RH R LL +  + GWL W  ++GR  
Sbjct: 4   LNLLRYYARLTPLGVGHDIKTTLPELAERLFTSPRHARNLLVRLNQLGWLTWTPKAGRHH 63

Query: 88  RGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTL 147
           R  L      E L+  +  + ++ GK +  L +          LL+   G   Q     +
Sbjct: 64  RSSLLLHRELEPLKEQLAAKRVQIGKYERALAILDNDEVAFAKLLKKTSGATVQEGRLHI 123

Query: 148 RIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFD-NNTQRPIGDLAHHWETSTDGLRW 206
           ++ Y RP EPL P      +E+ L  QI+S L   D N    P  +LAHHW       +W
Sbjct: 124 QLTYKRPFEPLLPHLPQRSSERFLIRQIYSCLVSSDANGHVHP--ELAHHWHYDPHTWQW 181

Query: 207 DFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPD 266
            FYLR  L +HNG  + A+ +      L  L         +  I+   P  + F L RPD
Sbjct: 182 TFYLRPELTFHNGAPLDANTIVSLFAKLSSLETHRAELAHISDIKAPTPFQVVFNLERPD 241

Query: 267 YWLAHRLASY------CSHLVHPQF------PLIGTGPFRLTQFTAELVRLESHDYYHLR 314
              A  ++         S L + QF      P+IG GPF + + T   ++L++   ++  
Sbjct: 242 PGFAGMISGVKYAIQPVSQLNYSQFHEGQIVPVIGCGPFEVQEHTRNKLKLKAFSQFYGC 301

Query: 315 HPLLKAVEYW------ITPPLFE---KDLGTSCRHPVQITIGKPEELQRVSQVSSGISLG 365
             L   V  W      ++ PL E    +  T+  H  Q+++     L   +Q  S +  G
Sbjct: 302 RALTDRVTIWQVDEERLSRPLIETNQPEANTTSHH--QVSLSDSPHLTSAAQQQSRVEDG 359

Query: 366 FCYLTL---RKSPRLSLWQARKVISIIHQSGLLQTLEVGENL--ITASHALLPGWTIPHW 420
            C + L   R    L   QA ++  +++ + + Q +     +  +  +H LLP W     
Sbjct: 360 -CLMVLFNQRAKQPLDQAQAHRLSELLNPNTIEQDIRCHGEMFGVEPAHNLLPSWRAVLK 418

Query: 421 QVPDEVKLPKTLTLVYHLPIELHTMAERLQATLSAEGCELTIIFHNAKNWDDTTLLAHAD 480
               +V LP  LTL  +    L T A+ +   L+A+G  L+I  +  +  +   L    D
Sbjct: 419 SPAPKVALPTQLTLALYNYTALQTCAQAIARLLAAQGITLSIHTYTYRELNQRALKGELD 478

Query: 481 --LMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQVMPDEENRFNAL 538
             L++ +  + +    +    L  +P+            L   L+AV+         + L
Sbjct: 479 ETLVLTNINLDDNRHASAFAMLFSNPILHACASQDEVIWLMQQLNAVREQAQLPQYLDQL 538

Query: 539 KAVFSQLMADATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAW 584
           + + S L++++ L PLF++   +     ++ V LT  GW +    W
Sbjct: 539 EPIASLLVSESWLAPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVW 584