Pairwise Alignments

Query, 673 a.a., UvrABC system protein B from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

 Score =  926 bits (2394), Expect = 0.0
 Identities = 471/668 (70%), Positives = 554/668 (82%), Gaps = 3/668 (0%)

Query: 1   MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60
           MSK F+L + FKP+GDQPEAIR++ EG+E GL+HQTLLGVTGSGKTF+IANVIA +QRPT
Sbjct: 1   MSK-FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPT 59

Query: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120
           +VLAPNKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS+N+HIE
Sbjct: 60  LVLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIE 119

Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180
           QMRLSATKA+LER D ++V +VS IYGLGDP  YLKM+LH+  G  +DQR +LRRL  LQ
Sbjct: 120 QMRLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQ 179

Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240
           Y RND  F R TFRVRG+VIDIFPAESD  A+R+ELFD+EVE LS FDPLTG+++  +PR
Sbjct: 180 YTRNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPR 239

Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300
           FT YPK+HYVTPRE ++ A+E+IK+EL  R   L   NKL+E QRL QRT+FDLEM+ EL
Sbjct: 240 FTFYPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMEL 299

Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360
           GYC+GIENYSR+LSGR  GEPPPTLFDYLPAD LLV+DESHV++PQ+G MY+GDR+RKET
Sbjct: 300 GYCNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKET 359

Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420
           LVEYGFRLPSALDNRP++F+E+EA+ PQTI+VSATPG YE E + G VV+QVVRPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVD 418

Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480
           P IEVRP  TQVDDLLSEIR+     ERVLVTTLTKRMAEDLT+YL +H  RVRYLHSDI
Sbjct: 419 PQIEVRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDI 478

Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540
           DTVER+EIIRDLRLG FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538

Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600
           RAARN+NG+AILY D +T SM +A+ ETERRR KQ  +NE +GI P+G+ K V DIL   
Sbjct: 539 RAARNLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVRDILEGA 598

Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDM-SPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659
                   K RG+++   E      ++ SP  + ++I +LE  M+  A++LEFE AA+ R
Sbjct: 599 TVPGSRSKKRRGEAKAAEESARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAAAEAR 658

Query: 660 DQLHQLRE 667
           D++H+LRE
Sbjct: 659 DEIHKLRE 666