Pairwise Alignments

Query, 673 a.a., UvrABC system protein B from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

 Score = 1020 bits (2638), Expect = 0.0
 Identities = 521/677 (76%), Positives = 592/677 (87%), Gaps = 5/677 (0%)

Query: 1   MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60
           MSK F+L S ++P+GDQP AI++L EGLE GLAHQTLLGVTGSGKTFT+ANVIA  QRPT
Sbjct: 1   MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPT 60

Query: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120
           ++LAPNKTLAAQLYGEMK FFP NAVEYFVSYYDYYQPEAYVP++DTFIEKDASVN HIE
Sbjct: 61  IILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE 120

Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180
           QMRLSATKA+LER+D V+VASVSAIYGLGDPD YLKMMLHL  G +I+QR +LRRLAELQ
Sbjct: 121 QMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQ 180

Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IP 239
           Y+RND AF+RG FRVRGEVIDIFPAESD  A+RVE+FD+E+E +SLFDPLTG I S  + 
Sbjct: 181 YSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLA 240

Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299
           RFTIYPKTHYVTPRERI++A+E+IK EL  RR+ LL+NNKLLEEQR++QRTQFD+EMMNE
Sbjct: 241 RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNE 300

Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359
           LG+CSGIENYSR+LSGR  GEPPPTLFDYLP DGLL++DESHVT+PQIG M++GDR+RKE
Sbjct: 301 LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKE 360

Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419
           TLVE+GFRLPSALDNRPLKF+EFEALAPQTI+VSATP  YEL KSGG+V +QVVRPTGLL
Sbjct: 361 TLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLL 420

Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479
           DPIIEVRPVATQVDDLLSE R RAA +ER+LVTTLTKRMAEDLTEYL EHG +VRYLHSD
Sbjct: 421 DPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD 480

Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539
           IDTVER+EIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+
Sbjct: 481 IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTM 540

Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599
           GRAARNVNGKAILY D IT SM KAI ETERRREKQ  YNE+ GITPQ L + V DI+ L
Sbjct: 541 GRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMEL 600

Query: 600 GQNIAKTKAKGRGKSRP---IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656
           G +IAK++ +   K  P   + E       ++P+ L+++I +LE  M QHAQNLEFE AA
Sbjct: 601 G-DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659

Query: 657 QIRDQLHQLRELFIAAS 673
           Q RD++HQLR+ FIA S
Sbjct: 660 QKRDEIHQLRQQFIANS 676