Pairwise Alignments

Query, 673 a.a., UvrABC system protein B from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  779 bits (2011), Expect = 0.0
 Identities = 394/665 (59%), Positives = 503/665 (75%), Gaps = 11/665 (1%)

Query: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
           F+L S ++P+GDQP+AI  L  GL      Q LLGVTGSGKTFT+A VIA++ RPT++LA
Sbjct: 38  FRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLILA 97

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEKD+S+NE I++MR 
Sbjct: 98  PNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 157

Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184
           +AT+A+LERRDV++VASVS IYG+G  + Y +M++ + VG  + +  +L+ L ELQ+ RN
Sbjct: 158 AATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFTRN 217

Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244
           D AF RG FRVRG+ ++IFPA  +D A RV L+ +E+E +  FDPLTG+I +++   T+Y
Sbjct: 218 DIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVTVY 277

Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304
           P +H+VTPR  + QA+  IK EL        +  K+LE QRL QRT FDLEM+   G+C 
Sbjct: 278 PASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGHCK 337

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364
            IENYSR L+GR PG+PPPTLF+YLP D LL VDESHV +PQIGGM+RGD  RK  L E+
Sbjct: 338 SIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLAEF 397

Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424
           GFRLPS +DNRPLKFEE++ + P +I+VSATPG +ELE++GG V +QV+RPTGL+DP+  
Sbjct: 398 GFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPVCI 457

Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           +RPV  QVDDLL E++  AA  ERVLVTTLTKRM+EDLTEYL E G RVRY+HSDI+T+E
Sbjct: 458 IRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIETLE 517

Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+EIIRDLRLG FDVLVGINLLREGLD+PE +LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 518 RIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAAR 577

Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-ALGQNI 603
           NV G+ ILY DK+T S+  AI ET RRR++QQ YN  HGITP+ +  ++ D+L ++ +  
Sbjct: 578 NVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVLSSVYEKD 637

Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663
             T   G       V  DN    +  K+L++ + +L+  M   A +LEFEEA ++RD++ 
Sbjct: 638 YVTVTTG-------VSGDN---QLVGKSLREHLADLDKRMRAAAADLEFEEAGRLRDEIR 687

Query: 664 QLREL 668
           +L  L
Sbjct: 688 RLEAL 692