Pairwise Alignments

Query, 673 a.a., UvrABC system protein B from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 698 a.a., Probable excinuclease ABC (subunit B-helicase) UvrB from Mycobacterium tuberculosis H37Rv

 Score =  738 bits (1904), Expect = 0.0
 Identities = 384/682 (56%), Positives = 487/682 (71%), Gaps = 22/682 (3%)

Query: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
           F++ S   P+GDQP AI  LE  +  G     LLG TG+GK+ T A +I  LQRPT+V+A
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQL  E++E  P NAVEYFVSYYDYYQPEAY+  +DT+IEKD+S+N+ +E++R 
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184
           SAT A+L RRDVVVVASVS IYGLG P  YL   + L VG  + +  +LR L ++QY RN
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244
           D +F RG+FRVRG+ ++I P+  +++A+R+E F +E+E L    PLTG+++  +    I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304
           P THYV   ER+  A+  I+EELA R   L    KLLE QRL  RT +D+EMM ++G+CS
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364
           GIENYSR + GRGPG PP TL DY P D LLV+DESHVT+PQIGGMY GD +RK  LVEY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424
           GFRLPSA DNRPL +EEF     QT+Y+SATPG YEL ++GG+ V+QV+RPTGL+DP + 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           V+P   Q+DDL+ EIR RA  ++RVLVTTLTK+MAEDLT+YL E G RVRYLHS++DT+ 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+E++R LRLG++DVLVGINLLREGLD+PEVSLVAILDADKEGFLRS RSLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597
           NV+G+  +Y DKIT SM +AI ETERRR KQ  YNE +GI PQ L KK+ DIL       
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 598 ---------ALGQNIAKTK----AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644
                      G+N ++ +      GR  S  + E  +    M    L   I +L   MM
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSA-MPRAELADLIKDLTAQMM 664

Query: 645 QHAQNLEFEEAAQIRDQLHQLR 666
             A++L+FE AA+ RD++  L+
Sbjct: 665 AAARDLQFELAARFRDEIADLK 686