Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 1274 bits (3297), Expect = 0.0
 Identities = 646/1140 (56%), Positives = 847/1140 (74%), Gaps = 7/1140 (0%)

Query: 25   LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-V 83
            LP  +G+Q   G L GAA +  +AE A       +L+  D Q+A RL +E++ F   + V
Sbjct: 9    LPAASGKQHW-GNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGLPV 67

Query: 84   MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 143
            ++  DWETLPYD FSPHQDI+S R+S LYQLP +  GVL+VP+ T + R+ P  FL G +
Sbjct: 68   LHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKRFLLGSS 127

Query: 144  LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 203
            LV+  GQ+L  + +R +L++AGYR VD V EHGE+A RGAL+DLFPMGS LPYR+D FDD
Sbjct: 128  LVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDD 187

Query: 204  EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 263
            EI++LR FD ++QR++++VE+I LLPA EFP  K A+  FR+++R+ F+V      IYQ 
Sbjct: 188  EIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQD 247

Query: 264  VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 323
            +S G  PAGIEY+ PLF+ E    LF Y P ++ + +   +E +AE+F +D   R+E R 
Sbjct: 248  LSTGITPAGIEYYLPLFYEETAT-LFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRYEERR 306

Query: 324  VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 383
            VDP RPLLPP  L++ V++ F+ LK WPRV    + + +         Q LP+LA++++ 
Sbjct: 307  VDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELAIESKA 366

Query: 384  KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRYL 441
              PL  LR+FLE++ G V+F+ ES GRRE L ELLAR+K+ PQ +    +  ASD+   +
Sbjct: 367  SEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASDQRLAI 426

Query: 442  MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 501
             I   + G    + ++AL+ ES L G+RV +RR+  +     + +I+NL EL  G PVVH
Sbjct: 427  TIAPLDEGL--QLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGSPVVH 484

Query: 502  LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 561
            ++HGVGRY G+TTLE  G   E+L+L YA +AKLYVPV+SLHLI+RY G  +  APLH+L
Sbjct: 485  IDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALAPLHRL 544

Query: 562  GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 621
            G + W +A++KAAE+VRDVAAELLDIYA+RAA+EG+AFK  +  Y+ F   FPFE TPDQ
Sbjct: 545  GSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEETPDQ 604

Query: 622  AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 681
              AI+AV  D+     MDRLVCGDVGFGKTEVAMRAAF+AV   +QV VLVPTTLLAQQH
Sbjct: 605  QAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLLAQQH 664

Query: 682  YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 741
            Y++FRDRFA+WPVR+E++SRF+SAKE    +AE+AEGKIDILIGTHKLLQ DVKF +LGL
Sbjct: 665  YNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFSNLGL 724

Query: 742  LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 801
            +I+DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNM+++GMRDLSIIATPPARRL+
Sbjct: 725  VIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPARRLS 784

Query: 802  VKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 861
            V+TFV E  + V++EA+LRE+LRGGQVYYL+NDV+ I+K A  L  LVPEAR+AIGHGQM
Sbjct: 785  VRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQM 844

Query: 862  RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 921
            RER+LE+VM+DF+H+RFNVLV +TIIETGID+P+ANTIIIERAD FGLAQLHQLRGRVGR
Sbjct: 845  RERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGR 904

Query: 922  SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 981
            SHHQAYA+LLTP  KAMT DAQKRLEAIA+ +DLGAGF LATHDLEIRGAGELLGE QSG
Sbjct: 905  SHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGEGQSG 964

Query: 982  SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1041
             ++ +GF+LYME+LE AV A++ G +P+LE       E+ LR+P+L+P+D++PDV+ RL 
Sbjct: 965  QIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLI 1024

Query: 1042 FYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGG 1101
             YKRIA+A  E+ L+E++VE+IDRFGLLP+P + L+ +  L+ QA+KLGI K++   +GG
Sbjct: 1025 LYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAGPQGG 1084

Query: 1102 VIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1161
             IEF+    V+P  LI L+Q QP+ Y+ +G T  KF   +   + R   +   +  L  N
Sbjct: 1085 RIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLERLAPN 1144