Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 1472 bits (3812), Expect = 0.0
 Identities = 734/1139 (64%), Positives = 902/1139 (79%), Gaps = 5/1139 (0%)

Query: 29   AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD 88
            AG+++ +G L GA+ A  +AE+A  H    +L  PD Q AL+L  E+ QF+   V    D
Sbjct: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74

Query: 89   WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 148
            WETLPYD+FSPHQDIIS R+S LYQLP++ RG+ IVPV+TL+QR  P  FL  H L++K+
Sbjct: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134

Query: 149  GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 208
            G   S D LR QL+++ YRHVDQV   GEYA+RG++LDLFPMGS  P+R+DFFDDEID++
Sbjct: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194

Query: 209  RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 268
            R FD D+QR++ E++ I LLPAHEFPT  AAIE FR++WR  FE +R+PE +Y QVSKGT
Sbjct: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254

Query: 269  LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMR 328
             PAGIEYWQPLFF E    LF Y PAN+ L+  G+LE + ++F  D   R++ R +DP+R
Sbjct: 255  WPAGIEYWQPLFF-EHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313

Query: 329  PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 388
            PLLPP  LWLR DELF+  K  P+VQL +  +  +A   N   Q LP LAV+ Q K PL 
Sbjct: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373

Query: 389  ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY--LMIGAA 446
            ALR+F E F G ++FSVESEGRREAL ELL RIK+ PQ       A  +     L++G+A
Sbjct: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433

Query: 447  EHGFVDTVRNLALICESDLLGERVA--RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 504
            E GF+     +ALICESDLLG+RV   RR++D +   N D +IRNLAEL  GQPVVH++H
Sbjct: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493

Query: 505  GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 564
            G+GRY G+ TLEAGG+  EY+ML Y N+AKLYVPVSSL+LISRY+GGAEE A LHKLGG+
Sbjct: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553

Query: 565  AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 624
            AW +AR+KAAEKVRDVAAELLD+YA+R  K GF F  DREQY  F  +FPFE T DQA A
Sbjct: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613

Query: 625  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 684
            INAVLSDMCQ  AMDRLVCGDVGFGKTEVAMRAAF+A DN KQVAVLVPTTLLAQQH++N
Sbjct: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673

Query: 685  FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 744
            FRDRFAN P+R+E++SRF+SAKEQ QIL +VA+GK+DIL+GTHKLL S+++F DLGLLIV
Sbjct: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733

Query: 745  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 804
            DEEHRFGVR KE++KAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA+KT
Sbjct: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793

Query: 805  FVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 864
            FVR+ +  V+REA+LREI+RGGQVY+L+N VE I K A  L +LVPEARI + HGQMRER
Sbjct: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853

Query: 865  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 924
            ELE+VMNDF+HQRFN+LVCTTIIETGID+PTANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913

Query: 925  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 984
            QAYA+LLTP PKA+T DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGEEQSG ++
Sbjct: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973

Query: 985  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1044
            ++GF+LYME+LE AV+ALK+G+EP+L+DL  +QTEVE+R+P+LLP+++IPD+NTRLS YK
Sbjct: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033

Query: 1045 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE 1104
            +IAS  +++EL E+KVELIDRFG LPD A  LL +A L+  A +L +RK+E +E+GG +E
Sbjct: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093

Query: 1105 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1163
            F     +NP +L+ LLQ QP+   +DGPT+LKF   L ER  RI++V   ++  ++N +
Sbjct: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL 1152