Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  743 bits (1919), Expect = 0.0
 Identities = 451/1162 (38%), Positives = 660/1162 (56%), Gaps = 56/1162 (4%)

Query: 35   LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLP 93
            +G +   A A ++AE+A R   PV  I  D Q    L   +     D  V+ L  W+ LP
Sbjct: 21   IGPVPTGAEALVLAELA-RAGAPVAYILSDGQKVADLEQVLGFVAPDIPVLTLPGWDCLP 79

Query: 94   YDSFSPHQDIISSRLSTLYQLPTMQR----GVLIVPVNTLMQRVCPHSFLHGHALVMKKG 149
            YD  SP  D  + RL+ L  L   +R     +++V +N  +QR+ P   +   A   + G
Sbjct: 80   YDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTARPG 139

Query: 150  QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 209
             ++  D L  +L+  G+  V  V E GE+A RG +LD++  GS  P RLDFF D ++++R
Sbjct: 140  NQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLEAIR 199

Query: 210  VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTL 269
             FD  SQRT+ +V +++L P  E       I  FR Q+   F      + +YQ VS+G  
Sbjct: 200  SFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDDALYQAVSEGRR 259

Query: 270  PAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVD---- 325
             AG+E+W PLF+   L  +F Y     ++ +    E +AER +   L  ++ R       
Sbjct: 260  YAGMEHWLPLFYDR-LETVFDYLDGFRIVTDHLAREAAAERSKL-VLDYYDARLASASPG 317

Query: 326  --------PMRPLLPPQSLWLRVDELFSELKNWPRVQLK--TEHLPTKAANANLGFQKLP 375
                    P +P+ PP  L+L        L +   V+L   TEH        N+  ++  
Sbjct: 318  KSQVTQGTPYKPV-PPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQGL 376

Query: 376  DLAVQAQQKAPLDALRKFLETFD-------------GPVVFSVESEGRREALGELLARIK 422
              A  A + A  D  R     FD               V+ S  +EG  + L ++LA   
Sbjct: 377  RWAKPAGE-ADNDGTRT--NVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHG 433

Query: 423  IAPQRIMRLDEASDRGRYLMIGAA------EHGFVDTVRNLALICESDLLGERVARRRQD 476
            +A   I  +   SD G      AA      E GF     +L +I E D+LG+R+ RR + 
Sbjct: 434  LA--NIRPVKALSDIGSLKPGEAASAVLSLEAGF--ETGDLVVIGEQDILGDRLVRRSKR 489

Query: 477  SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 536
             +R  +    I  +  L  G  VVH EHG+GR+ G+ T+EA G   + L L YA+DAKL+
Sbjct: 490  RKRGAD---FIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLF 546

Query: 537  VPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 596
            +PV ++ L+SRY G    +A L KLGG AW   + K  +++ D+A  L+ I A+R  +  
Sbjct: 547  LPVENIELLSRY-GSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHA 605

Query: 597  FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 656
                     Y  F   FP++ T DQ  +I+AV  D+ +   MDRLVCGDVGFGKTEVA+R
Sbjct: 606  PVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALR 665

Query: 657  AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 716
            AAF+A  N  QVAV+VPTTLLA+QH+  F DRF   P+RI+  SR   +K+      EVA
Sbjct: 666  AAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVA 725

Query: 717  EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 776
            EGK DI++GTH LL S +KF +LGLLI+DEE  FGV+HKER+K ++ +V +LTL+ATPIP
Sbjct: 726  EGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIP 785

Query: 777  RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVE 836
            RTL +A++G+R+LS+I TPP  R+AV+TF+  +D+LV+RE ++RE  RGGQ +Y+   V 
Sbjct: 786  RTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVS 845

Query: 837  NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 896
            ++ +  + L   VPE ++A+ HGQM   ELE +MN F+  R++VL+ TTI+E+G+D+PTA
Sbjct: 846  DLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTA 905

Query: 897  NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 956
            NT+I+ RAD FGLAQL+QLRGRVGRS  +A+A    P  K +T  A++RL+ + SL+ LG
Sbjct: 906  NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLG 965

Query: 957  AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1016
            AGF LA+HDL+IRGAG LLGEEQSG ++ +GF LY ++LE AV  LK   E  + D T  
Sbjct: 966  AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKG--EEEIHD-TGW 1022

Query: 1017 QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1076
              ++ +  P ++P++++PD+N RL  Y+R+       E++    ELIDRFG LP   + L
Sbjct: 1023 SPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHL 1082

Query: 1077 LDVARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLK 1136
            L +  ++   +   + KL+   KG V++F  K   NPA L+G + KQ    ++     + 
Sbjct: 1083 LKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIF 1142

Query: 1137 FIQDLSERKTRIEWVRQFMREL 1158
            F ++L+  + R+      M +L
Sbjct: 1143 FQRELATPEKRLSGAAMVMTQL 1164