Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  763 bits (1970), Expect = 0.0
 Identities = 455/1157 (39%), Positives = 660/1157 (57%), Gaps = 49/1157 (4%)

Query: 44   ATLVAEIAERHAGPVVL-IAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQ 101
            A ++ E+A R   P VL +A D     RL + I+ F   + ++    W+ +PYD  SP+ 
Sbjct: 25   ALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNV 84

Query: 102  DIISSRLSTLYQL---PTMQRG--VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 156
            +I++ RL TL +L   PT Q G  +++   + ++QRV P   L       + G RL    
Sbjct: 85   EIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGK 144

Query: 157  LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 216
            L   L   GY   +QVME GEYA RG ++D+FP G+  P RLD F DE+DSLR FD  SQ
Sbjct: 145  LLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQ 204

Query: 217  RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYW 276
            RT  + +A+ L P  E   DK +I  FRS +R+ F      + +Y+ +S G    G+E+W
Sbjct: 205  RTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPFMGMEHW 264

Query: 277  QPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR-------------- 322
             PLF  E +  LF+Y P   + ++ G L+ +    Q      FE R              
Sbjct: 265  LPLFH-EGMDTLFAYVPDGPVTLDPG-LDGALRSRQDQIFEYFEARRLMESVGDGAKASE 322

Query: 323  --GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL-------GFQK 373
              G   +   LPP  ++L  DE        P         P  A    +          +
Sbjct: 323  KPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFLGRPGHE 382

Query: 374  LPDLAVQAQQKAPLDALRKFLETFDGP---VVFSVESEGRREALGELLARIKIAP----Q 426
              D+  +A      DALR   +        VV +  + G RE +  +L    ++P    +
Sbjct: 383  FADIRARAGGNV-FDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTAE 441

Query: 427  RIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 486
                  E + +   ++    + GF     +LA+I E+D+LG+R++R     R+    D  
Sbjct: 442  TWAEALERAKKATVVLTLILDRGF--ETPDLAVISEADVLGDRLSR---PVRKKKLGDKF 496

Query: 487  IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 546
            I +++ L  G  VVH++HG+G+Y G+ TL AGG   + L + YA++ +LYVPV ++ ++S
Sbjct: 497  IPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIEVLS 556

Query: 547  RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 606
            RY G  +    L KLGG AW   + K  +++RD+A +L+ + A R  K G         Y
Sbjct: 557  RY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPEGLY 615

Query: 607  QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666
              F   FP+  T DQ +AI   L D+     MDRL+CGDVGFGKTEVA+RAAF    + +
Sbjct: 616  DEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAMSGR 675

Query: 667  QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726
            QVAV+VPTTLLA+QH+  F++RFA  PVRI  +SR  +A++   +  E+A G +DI++GT
Sbjct: 676  QVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVGT 735

Query: 727  HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786
            H LL   V+F+DLGLLIVDEE  FGV HKER+K MRA+V +LTLTATPIPRTL +A++G+
Sbjct: 736  HALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLALTGV 795

Query: 787  RDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLA 846
            R++SIIATPP  RLAV+TFV  +D +VVREAILRE  RGGQ +Y+   + +I K  ERL 
Sbjct: 796  REMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVMERLT 855

Query: 847  ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 906
             LVP+ R  + HGQM    LE VM  F   +++VLV T I+E+G+DIP ANTIII RAD 
Sbjct: 856  TLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHRADM 915

Query: 907  FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 966
            FGLAQL+QLRGRVGR+  + YA+L  P  + ++  A KRL+ + +L+ LGAGF LA+HDL
Sbjct: 916  FGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLASHDL 975

Query: 967  EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT-SQQTEVELRMP 1025
            +IRGAG LLG+EQSG ++ +G  LY +LLE AV A + G  P +E+ + +   +++L  P
Sbjct: 976  DIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQLGTP 1033

Query: 1026 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQ 1085
             L+PD ++ D+  RL  Y+RIA    E E++E+  E++DRFG LPD    LL V  ++  
Sbjct: 1034 ILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTIKVL 1093

Query: 1086 AQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK 1145
             ++    K++   KG V+ F +    NP  L+  + +     +L    +L + +D    +
Sbjct: 1094 CRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWEVAR 1153

Query: 1146 TRIEWVRQFMRELEENA 1162
             RI+ + + MR L + A
Sbjct: 1154 ERIQGLGKLMRTLADIA 1170