Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

 Score =  624 bits (1609), Expect = 0.0
 Identities = 412/1108 (37%), Positives = 589/1108 (53%), Gaps = 74/1108 (6%)

Query: 38   LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 97
            L   A A L+   A    GP++++    + A  L  E+       V  L  WETLP++  
Sbjct: 42   LIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERL 101

Query: 98   SPHQDIISSRLSTLYQLPTMQR-------GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 150
            SP  D + +RL  L +L            GV++  V +L+Q + P   +    L +  G 
Sbjct: 102  SPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMM-EPLTLTVGD 160

Query: 151  RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 210
                D +  +L    Y  VD V   GE+A RG +LD+F   +E P R++F+ DEI  +R+
Sbjct: 161  ESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRM 220

Query: 211  FDVDSQR--------TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ 262
            F V  QR        TL       LL + +     A +         T  V      +  
Sbjct: 221  FSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPAAEST--VTGSASDMLA 278

Query: 263  QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---------NTGDLETSAERF-- 311
            ++++G    G+E   P+ +S+    L    P  T ++            DL  +   F  
Sbjct: 279  KLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLE 338

Query: 312  ---QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKN-----WPRVQLKTE---HL 360
                   L   EN+    +  L    S ++ +D++ +         W   QL  E    L
Sbjct: 339  ASWSVAALGTAENQAPVDVEQL--GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIEL 396

Query: 361  PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR 420
              +AA +  G Q+  D             LR  + T  G         G    + E L+ 
Sbjct: 397  DVRAAPSARGHQRDIDEIFAM--------LRAHIAT-GGYAALVAPGTGTAHRVVERLSE 447

Query: 421  IKIAPQRIMRLDEASDRGRY-LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 479
                P  ++   +A   G   ++ G    G +    NL +I E+DL G RV+   +  R 
Sbjct: 448  SD-TPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAA-EGKRL 505

Query: 480  TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA--------- 530
                  ++  LA L  G  VVH +HG+GR+  M     GG   EYL+L YA         
Sbjct: 506  AAKRRNIVDPLA-LTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 564

Query: 531  NDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 589
            N  KLYVP+ SL  +SRY GG    AP L +LGG  W+  + KA   VR++A EL+ +YA
Sbjct: 565  NTDKLYVPMDSLDQLSRYVGG---QAPALSRLGGSDWANTKTKARRAVREIAGELVSLYA 621

Query: 590  QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 649
            +R A  G AF  D        D+F F  T DQ  AI  V +DM +P+ MDR++CGDVG+G
Sbjct: 622  KRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYG 681

Query: 650  KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 709
            KTE+A+RAAF AV + KQVAVLVPTTLLA QH   F +R + +PV I+ +SRF  A E  
Sbjct: 682  KTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESR 741

Query: 710  QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 769
             ++  +A+G +DI+IGTH+LLQ+ V++KDLGL++VDEE RFGV HKE IK++R +VD+LT
Sbjct: 742  AVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLT 801

Query: 770  LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVY 829
            ++ATPIPRTL M+++G+R++S I TPP  R  V T+V  +D   +  A+ RE+LR GQ +
Sbjct: 802  MSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAF 861

Query: 830  YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 889
            Y++N V +I  AA R+ ELVPEAR+ + HGQM E  LE  +  F ++  ++LVCTTI+ET
Sbjct: 862  YVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVET 921

Query: 890  GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 949
            G+DI  ANT+I+ERAD FGL+QLHQLRGRVGRS  + YA+ L P    +T  A  RL  I
Sbjct: 922  GLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATI 981

Query: 950  ASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPS 1009
            A   +LGAG A+A  DLEIRGAG +LG EQSG +  +GF LY+ L+  A++  +     +
Sbjct: 982  AQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAA 1041

Query: 1010 LEDLTSQQTE------VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1063
             +  T +  E      ++L + + LP D+I     RL  Y+R+A+A ++ E+  +  EL 
Sbjct: 1042 ADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELT 1101

Query: 1064 DRFGLLPDPARTLLDVARLRQQAQKLGI 1091
            DR+G LP+PAR L  VARLR   +  GI
Sbjct: 1102 DRYGALPEPARRLAAVARLRLLCRGSGI 1129