Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score = 1195 bits (3091), Expect = 0.0
 Identities = 618/1152 (53%), Positives = 810/1152 (70%), Gaps = 21/1152 (1%)

Query: 26   PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM--- 82
            P +  + R  G+L G++ A  + E A  H G  ++I     +A+RL   +  F       
Sbjct: 20   PSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLPPEE 79

Query: 83   -----------VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 131
                       +++L DWETLPYD FSPHQDIIS R+ TL++LP    GVL+VP  TLM 
Sbjct: 80   DGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPARTLMH 139

Query: 132  RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191
            R+ P ++L G+ L+++ GQ L  ++ R QL++AGYRH + V EHGEYA RGA+LD+FPMG
Sbjct: 140  RLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMG 199

Query: 192  SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 251
            +  P+R+D FDDEI++LR FD ++QR+++ +E I LLPA EFP  K A   FRS+W + F
Sbjct: 200  ASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWFEQF 259

Query: 252  EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERF 311
                    IYQ V+ G  P GIEY+ PLFF E    LF Y P  T +     L  +   F
Sbjct: 260  PDADKDTPIYQDVTHGITPPGIEYYLPLFFDETAT-LFDYLPGATHVFTADGLNDAVSHF 318

Query: 312  QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGF 371
             ++T  R+E+R  D +RP+LPP+ L+L+ +ELF +LK +PRV +  E     A + N   
Sbjct: 319  DSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAE-TKDAAGSVNCPT 377

Query: 372  QKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREAL----GELLARIKIAPQR 427
              LPD+A+  +   P   L++FL  FDG V+   ES GRREAL    GE    +K     
Sbjct: 378  TTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELKTLSGW 437

Query: 428  IMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 487
               LD+  +    + I   E G V    ++ALI E+ L GERV +RR+  + T   D   
Sbjct: 438  QAFLDD-KESSVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRREKPTETDDAGF 496

Query: 488  RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 547
            R+L+EL IG PVVH++HGVGRY G+ T+   G   E+LML YA  +KLYVPVSSLHLISR
Sbjct: 497  RDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVSSLHLISR 556

Query: 548  YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 607
            YAG   E+APLHKLG D WS A+QKA EK+RD AAELLD+YA+R A++GF+F+  +E Y+
Sbjct: 557  YAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEAYR 616

Query: 608  LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 667
             F   FPFE TPDQ  AI +V  DM     MDRLVCGDVGFGKTEVAMRAAFLA  + KQ
Sbjct: 617  AFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQ 676

Query: 668  VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 727
            VAVLVPTTLLAQQHY++FRDRF++ PV++E++SRFR+A + ++ L  V  G+ DI+IGTH
Sbjct: 677  VAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTH 736

Query: 728  KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 787
            KLLQ D+KFK+LGL+I+DEEHRFGV+ KER+KA+RA VD+L LTATPIPRTLNMAM  +R
Sbjct: 737  KLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNMAMGHLR 796

Query: 788  DLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 847
            DLSIIATPPARRL+VKTFVR+ D+ +V+EAILREILRGGQVY+L+NDV  I+K AE L  
Sbjct: 797  DLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEKTAEDLRS 856

Query: 848  LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 907
            L+PEAR+ + HGQMRER+LE++M+DF+H+RFNVLVCTTIIETGID+P+ANTIIIERAD F
Sbjct: 857  LIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKF 916

Query: 908  GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 967
            GLAQLHQLRGRVGRSHHQAYA+LLTP PK++T DA+KRL+AI+  +DLGAGF LATHDLE
Sbjct: 917  GLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLE 976

Query: 968  IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1027
            IRGAGELLGEEQSG +E+IGF+LYM+LL+ AV A++ GR P+ +   S  TE+ LR+P+L
Sbjct: 977  IRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEMNLRIPAL 1036

Query: 1028 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQ 1087
            +P+D++PDV+ RL  YKRIAS  +   L+E++VE+IDRFGLLPDPA+ L+    LR +A+
Sbjct: 1037 IPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQTELRLRAE 1096

Query: 1088 KLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR 1147
             LGI K++  ++   +EF     V+P  L+  +Q  P  YRL+G    +F    +    +
Sbjct: 1097 ALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRLKDATTGGK 1156

Query: 1148 IEWVRQFMRELE 1159
            ++ + + + ELE
Sbjct: 1157 LDGISRMLGELE 1168