Pairwise Alignments

Query, 661 a.a., Cyclic di-GMP phosphodiesterase PdeR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1094 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  325 bits (834), Expect = 5e-93
 Identities = 208/606 (34%), Positives = 329/606 (54%), Gaps = 13/606 (2%)

Query: 62   SSLMMSLTVD-ESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEA 120
            +SLM  +  + +  LSV + GR     E A  A A +   +  ++ +  LS A  V    
Sbjct: 487  ASLMQRMAQNTQLQLSVPVDGRD----EVAKMAMALNAMLSERQEANRELSLASAVFEYC 542

Query: 121  HSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSG 180
               IV+ D    I+  N      TG    +V G+S   L  S ++            +  
Sbjct: 543  AEGIVVTDKDNLIEAVNPAFTQITGYTLEEVKGRSPAVL-NSHQQPHHFYEQMWQSLKQY 601

Query: 181  NAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTD 240
              ++ E+W   + GQ    +    V        +  I    DI+  ++ ++ +   +N D
Sbjct: 602  GKWQGEIWNKRKNGQIFPEYLAITVVKDDKGRVVQHIGLFLDISNRKKYEQDIWYKSNYD 661

Query: 241  SITGLPNRNAMQELIDHAINHADNN--KVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSL 298
            ++T LPNR      +   +  A+     V V+++DLD FK +ND YGH  GD+LL+  + 
Sbjct: 662  ALTNLPNRQLYTSRLSQMLQLAEQRCCSVAVLFIDLDRFKYINDIYGHAVGDELLQVAAA 721

Query: 299  AILSCLEHDQVLARPGGDEFLVLASNTS-QSALEAMASRILTRLRLPFRIGLIEVYTSCS 357
             + + LE    +AR  GDEF+V+  +T  Q  +E  A  IL  L  PF I   E+  S S
Sbjct: 722  RLEALLEQHDFVARLSGDEFVVVMGHTKHQGEIEQRAQNILQHLSSPFGINRNELLISAS 781

Query: 358  VGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKAL 417
            VGI+  P +G+    + R+A+TAMY AK+ GR  F  F+P+MN  +   + L+ +LR A+
Sbjct: 782  VGISCYPSNGTSVEVLTRNAETAMYQAKQDGRNCFGYFSPDMNNNMLARITLEQSLRSAV 841

Query: 418  ENDQLVIHYQPKI-TWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVI 476
               +  +HYQP + T  GE  +LEAL+RW+ P+RGL+PP +FI  AEE+GLI P+G WVI
Sbjct: 842  LQHEFCLHYQPIVDTSSGEGVALEALLRWRHPQRGLVPPDEFIPIAEETGLIEPIGEWVI 901

Query: 477  LDVVRQVAKWRDKGINLRVAVNISARQLA--DQTIFTA-LKQVLQELNFEYCPIDVELTE 533
               +R + +   +GI + +A+N+S RQLA  D + F   L  +LQ+ +     + +E+TE
Sbjct: 902  QQALRDLRQCHSQGIMINMAINVSGRQLAHGDPSHFACMLNGLLQKYDVAPQYVHIEITE 961

Query: 534  SCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQ 593
            S L+ + EL+L  +     LG +++LDDFGTGYSSLS L +FPI  IK+D+ FV ++ + 
Sbjct: 962  SILMADTELSLKALTAIRHLGVEIYLDDFGTGYSSLSYLKQFPISVIKIDKSFVDNMLED 1021

Query: 594  PVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERW 653
                +L++AI+ + Q+L+++++AEGVES  + +FL   G +  QG+L AKPMP    E  
Sbjct: 1022 RADANLIKAIITMGQSLDMRLVAEGVESEPQRSFLQGLGCDFVQGYLVAKPMPLKELEPL 1081

Query: 654  YKRYLK 659
             +R ++
Sbjct: 1082 LRRIVR 1087