Pairwise Alignments

Query, 430 a.a., hypothetical protein from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 431 a.a., ABC transporter, periplasmic substrate-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 79.7 bits (195), Expect = 2e-19
 Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 24/345 (6%)

Query: 3   KSKIVLLSALVSCALISGCKEENKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGITV 62
           K+  ++ ++L+S  L++G     K N++  F   SV      ++  +  +F KE+P I +
Sbjct: 6   KTCALVAASLLSLTLMAGTALAEKVNLTFYFP-VSVGGPITKIVEGMTEQFMKEHPDINI 64

Query: 63  KQVPVEEDAYN---TKVITLSRSGSLPEV-IETSHDYAKVMDKEQLIDRKAVATVISNVG 118
              PV    Y    TK +T  R G  P V +  S D   ++D++ ++   ++        
Sbjct: 65  --TPVYAGIYRETLTKALTALRGGEPPHVAVLLSTDMYTLIDEDAIVPYDSIMKPEEMAF 122

Query: 119 EGAFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEE---PKNWQQLLDVA 175
             AF+ G +   +T  G  W G+P       +++ K+    AGL+    P NWQ+L+ + 
Sbjct: 123 TKAFFPGFMSNSQT-GGKTW-GIPFQRSTIVMYWNKEAFKAAGLDPDKAPANWQELVAMG 180

Query: 176 QKL--NDPANK--KYGIALPTAESVLTEQSFSQFALSNQANVFNAEG-KITLDTPEMMQA 230
           +KL   D + K  ++G+A+P+  +          A+ N   + NAEG K   D P+ ++A
Sbjct: 181 KKLTVKDESGKVTQWGVAIPS--TGYAYWMLQALAIQNGVELMNAEGTKTYFDDPKAIEA 238

Query: 231 LTYYRDLAAN---TMPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKEGD-PKNVGFVV 286
           LT+  DLA     +  G+ D       F      +   +T  L  V K    P  VG + 
Sbjct: 239 LTFLVDLAGKHGVSPSGTIDWATTPRDFFERKTAIMWTTTGNLTNVRKNAQFPFGVGMLP 298

Query: 287 PTEKNSAVYGMLTSLTITAGQKTEETEAAEKFVTFMEQADNIADW 331
              +  +  G   +  I       E +AA  FV +M  A+  A W
Sbjct: 299 ANTRPGSPTGG-GNFYIFKKSTPAERQAAVTFVKWMTSAERAAQW 342