Pairwise Alignments

Query, 481 a.a., Ribosomal RNA small subunit methyltransferase F from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

 Score =  554 bits (1427), Expect = e-162
 Identities = 268/471 (56%), Positives = 346/471 (73%), Gaps = 3/471 (0%)

Query: 8   VYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLT 67
           +  P+ F+  M + +P      DF+AACQRPLR+SIRVNTLKISVA+F Q  A   W LT
Sbjct: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94

Query: 68  PIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVA 127
           P+PWCE GFWI+ D E  +PLG+TAEH++GLFYIQEASSM+PV+ALF        V+D+A
Sbjct: 95  PVPWCENGFWIDAD-ESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMA 153

Query: 128 AAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVP 187
           AAPGSKTTQ+AA M+N+G ++ANEFSASRVKVLHANI RCGI N AL++FDG VFG  +P
Sbjct: 154 AAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP 213

Query: 188 EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS 247
           E FDA+L+DAPCSGEG +RKDPDA+KNWS ES Q IA TQ+ LI+SAF AL+ GGTLVYS
Sbjct: 214 ERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYS 273

Query: 248 TCTLNREENEAVCMWLKETYPDAVEFLPLGELFPAANKALTEEGFLHVFPQIYDCEGFFV 307
           TCTL+REEN+ VC  LK+TY DAV F  LG LF  A+ ALTEEGFLH+FPQ+YDCEGFFV
Sbjct: 274 TCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFV 333

Query: 308 ARLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQI-RQAAAGVGLNWDENLRLWQRDKEL 366
           A++RK  ++P  P    ++G FPF+    ++  +I +Q    +G+    + ++W RD ++
Sbjct: 334 AKIRKLASVPT-PEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWLRDNDV 392

Query: 367 WLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALATPDNVNAFELTPQEAEEW 426
           WLFP  +E L+G++RFSR+GIK+AE H  GYRWQH+    LA+    ++ EL   +A EW
Sbjct: 393 WLFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSVELDTTQAREW 452

Query: 427 YRGRDVYPQAAPVADDVLVTFQHQPIGLAKRIGSRLKNSYPRELVRDGKLF 477
           + GRDV P+      +V++ + +  IGL K +G+R+KN  PRELVRD  LF
Sbjct: 453 FMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRDKNLF 503