Pairwise Alignments

Query, 481 a.a., Ribosomal RNA small subunit methyltransferase F from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 454 a.a., tRNA/rRNA cytosine-C5-methylase (NCBI) from Rhodospirillum rubrum S1H

 Score =  113 bits (282), Expect = 2e-29
 Identities = 95/299 (31%), Positives = 142/299 (47%), Gaps = 31/299 (10%)

Query: 29  DDFLAACQRPLRRSIRVNTLK-------ISVADFLQLTAPYGWTLTPIPWCEEGFWIERD 81
           +D L A Q      +RVN LK       +++A     T P    L+P     EG    R 
Sbjct: 153 EDELRALQAEAPLDLRVNALKSDRESARLALAREQVDTRP--GALSPCALRAEG----RP 206

Query: 82  NEDALPLGSTAEHLSGLFYIQ-EASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAAR 140
           N     +  TA    GL  +Q E S M+ +    A G +   V+D+ A  G KT  +AA 
Sbjct: 207 N-----VAITAPFCDGLVEVQDEGSQMVALLCAVAPGMS---VLDLCAGAGGKTLALAAG 258

Query: 141 MNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG--RVFGVAVPEMFDAILLDAP 198
           M N+G ++A + S  R+      + R G+ NV     D   R +       FD +L+DAP
Sbjct: 259 MENKGTLVATDISEGRLARAQTRLQRAGVHNVTRKVLDPETRKWLKRRKASFDVVLVDAP 318

Query: 199 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEA 258
           CSG G  R++PDA    +P++   + A Q  L+D A   ++PGG LVY+TC+L   ENEA
Sbjct: 319 CSGTGTWRRNPDARWKLTPDTISALNAEQSALLDRAAALVKPGGRLVYATCSLLPAENEA 378

Query: 259 -VCMWLKETYPDAVEFLPLGELF----PAANKALTEEGFLHVFPQIYDCEGFFVARLRK 312
            +  +L+    D    LP+ E +    PA      +  +L + P  +  +GFFV+ L +
Sbjct: 379 QIAAFLERR--DDYRALPVAETWAKVSPAPYPGAADVSWLRLTPASHGTDGFFVSILER 435