Pairwise Alignments

Query, 949 a.a., putative diguanylate cyclase DgcE from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  173 bits (439), Expect = 4e-47
 Identities = 178/715 (24%), Positives = 315/715 (44%), Gaps = 65/715 (9%)

Query: 255 IEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIY-----------SWDKRMF 303
           +E   EL R  +   +   R+ LA +A G+G+W+W+L+ N               +KR  
Sbjct: 259 VERTAELARAAEELGESEARLNLALDASGLGLWDWDLQHNRVHHSRLEVVFGVGLEKRHA 318

Query: 304 ELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSFQSRSPFKLEFRIAVKDGIRHIRAL 363
           E   + P I P         LP    HA  +     +S   F +E+R    DG       
Sbjct: 319 EDGSLLPDIHPQ-------DLPI--VHATLIAHLKGESEQ-FAVEYRAVRADGSEICIED 368

Query: 364 ANRELNKE--GEVERLLGINMDMTEVKQLNEALFQEKERLHITL-DSIGEAVVCIDMAMK 420
             R + ++  G   R++G   D+++V++       E++RL  T+ ++  E +V +D   +
Sbjct: 369 RGRVIQRDASGRALRMIGTRRDISDVRRQ-----AEQQRLAATVFEAASEGMVIMDATYR 423

Query: 421 ITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTSRSAIEQ------ 474
           +  +N     +SG+ +EE LG  +  +         P  +  Y A   R A+E+      
Sbjct: 424 VLAVNDACCALSGYEREELLGRSIARIA------GTPESQRQYEA--MRDALERHGHWQG 475

Query: 475 DVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSASHDALTHL 534
           +++   +SG  Y     +  +   D S    V  I D++  RK+  +L Y   +D LT L
Sbjct: 476 ELIEKRKSGEVYPQWVQLREVRDSDDSVTHVVAFISDLSVRRKIEERLRYLTHYDDLTGL 535

Query: 535 ANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSM 594
           ANR  F+++L    Q V    +  A+++IDLDRFK +N+S GH A DALLRE++  + + 
Sbjct: 536 ANRGLFKERLHEACQRVRRNGRNMAVLYIDLDRFKLLNESLGHEAADALLREVSRRLSTT 595

Query: 595 LRSSDVLARLGGDEFGLLLPDC-NVESARFIATRIISAVNDYHFIWEGRVHRVGASAGIT 653
           L  +D +ARL GDEF +LL    ++ S   + +R++  +     I E  +  + AS G++
Sbjct: 596 LAEADTIARLSGDEFVVLLDAYGSLSSLAHLGSRLLQRIRKPMVIDEQEL-VISASIGVS 654

Query: 654 LIDDNNHQAAEVMSQADIACYASQNGGRGRVTVY--EPQQAAAHSERAAMSLDEQWRMIK 711
           L+ DN+  A  ++ QA+IA   +++ G   +  +   PQ ++ H     + L+ Q R   
Sbjct: 655 LLPDNSRDAEALLRQANIAMQQAKHLGGNTLQFFTDRPQASSMH----YLQLENQLRKAL 710

Query: 712 E-NQLMMLAH---GVASPRIPEARNLWLISLKLWSCESEIIDEQTFRRSFSDPALSHALD 767
           E  QL +       +A   +  A  L    ++    E  ++    F     +  L   L 
Sbjct: 711 EVGQLEVFYQPRLSLADDSLEAAEAL----VRWRHPELGLVAPAQFIPLAEETGLIIPLG 766

Query: 768 RRVFHDFFQQAA--KAVASKGLSIALPLSVAGLSSATLVNELLEQRENSPLPARLLHLII 825
             V  +  +QA   +      + +++ LSV  L     V+ + +  E + LPA +L L +
Sbjct: 767 EFVLREACRQARQWQQDGLAAIRVSVNLSVKQLRQGNFVSLVRQVLEETGLPATMLELEL 826

Query: 826 PAEAIFDHAESV----QKLRLAGCRIVLSQMGRDLQIFNSLKANMADYLLLDGELCANVQ 881
               + D  ++     ++LR  G ++ +   G      + LK    DY+ +D    + ++
Sbjct: 827 TESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYLKRFPVDYVKIDRSFISELE 886

Query: 882 GNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGDVIANAQP 936
            +  D  +   I      L  K +A  V     MD L     D I G +++   P
Sbjct: 887 HSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANHCDEIQGYLLSPPVP 941



 Score = 37.0 bits (84), Expect = 6e-06
 Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 142 SESETRFRNAMEYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLN 201
           +E +       E ++ GM ++    + L  N A C   GY +EEL G +  ++    +  
Sbjct: 398 AEQQRLAATVFEAASEGMVIMDATYRVLAVNDACCALSGYEREELLGRSIARIAGTPESQ 457

Query: 202 KDLQQVEKLIS--GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDIN 259
           +  + +   +   G      +EKR   ++G+V    + +  VR +D +  + +A I D++
Sbjct: 458 RQYEAMRDALERHGHWQGELIEKR---KSGEVYPQWVQLREVRDSDDSVTHVVAFISDLS 514

Query: 260 ELKRTEQ 266
             ++ E+
Sbjct: 515 VRRKIEE 521