Pairwise Alignments

Query, 518 a.a., putative cyclic di-GMP phosphodiesterase PdeN from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 515 a.a., rtn protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  213 bits (542), Expect = 1e-59
 Identities = 139/411 (33%), Positives = 211/411 (51%), Gaps = 16/411 (3%)

Query: 106 CSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAAL 165
           CSS  G +D PLN L+P  D  K     I+P TP     PAI++      L    V    
Sbjct: 112 CSSTMGVIDYPLNSLLPE-DTLKKPAYFIVPETPARSGVPAILVISTQANLTRGAVVIIE 170

Query: 166 NLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVR 225
              L  S          +     + +  L    + L  V +  D  V   K     + + 
Sbjct: 171 GQYLIDSFIQP------EVFPRPVSHVVLGLKGATLPTVPQFGDGKVVAVKAEHSEVVIL 224

Query: 226 LYADD-WTWNDVWYAF--LLGGMSGTV--VGLLCYYLMSVRMRPGREIMTAIKREQFYVA 280
           L     + W+  W  F  LL  +   V  VGL  +   S R     +I + I+ ++F++ 
Sbjct: 225 LEVSQAFFWHFFWICFGILLPFLLAFVWLVGLHLWRKKS-RSSLADDIKSGIENQEFFLV 283

Query: 281 YQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAA 340
           YQP+V +   +  G+E L+RW+HP  G + PD FI  AE  ++IVPLT ++FE    D +
Sbjct: 284 YQPIVSSDDGKAKGVEALVRWQHPQMGLVRPDLFIPIAEQSQLIVPLTNYIFERALADFS 343

Query: 341 ELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEAT 400
           +L   +  G + G N+AP+H      +A  + L  +      Q ++EITER +L      
Sbjct: 344 KLS--VDSGFRIGFNVAPEHFIQSDIEAKFRYLKDAFARIGVQPLIEITERQLLTADMCE 401

Query: 401 QLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVL 460
           ++ A L  + + +AIDDFGTG + L  L+ FTLDYLKID+ FI+ IG +++TS VLD ++
Sbjct: 402 RITA-LRELDILVAIDDFGTGQTTLSLLQTFTLDYLKIDKCFIDTIGQDSVTSHVLDTII 460

Query: 461 TLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLK 511
            L  ++N + VAEGVET +QA +L  R V+F+QGY  ++P+ LD+   WL+
Sbjct: 461 ELCHKMNYVAVAEGVETQQQADYLISRDVHFLQGYLFAKPMKLDELSHWLE 511