Pairwise Alignments

Query, 586 a.a., Putative DNA repair helicase RadD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 464 a.a., DNA or RNA helicases of superfamily II from Pseudomonas stutzeri RCH2

 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 87/375 (23%), Positives = 149/375 (39%), Gaps = 37/375 (9%)

Query: 1   MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR--LARGRV-LVLAH 57
           M  +LR +Q+  ++  L HF           P GAGK+ + AELAR  L +GR+ LVL  
Sbjct: 1   MTSSLRDWQRRCINTALEHFLSTSHFFCQATP-GAGKTRMAAELARNLLDQGRIDLVLCF 59

Query: 58  VKELVAQNHAKYQALGLEADIFAAGLKRKESHVKVVFGSV--QSVARNLDAFQ---GEFS 112
                          G  +   A   +R +  +  V  +   Q++    +AF     ++ 
Sbjct: 60  APSCQVVE-------GFRSTFMAVLGRRLDGQLGAVGAAYTYQAMDYREEAFWQLLDDYR 112

Query: 113 LLIV-DECHRIGDDE----ESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167
           + +V DE H     +     +  QQIL  +   +     L L+ TP+R     I    Y 
Sbjct: 113 VFVVFDEIHHCAGHDPLLSNAWGQQILQRVQ--DRAACTLALSGTPWRSDDRAIALARYS 170

Query: 168 GM-------VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDF---SRLQAQ 217
                     R   K    D +   P   ++ +  +   E L        F   ++L  +
Sbjct: 171 SPEGQLICDFRYGLKEAIADGVCRSPRIVLLDNQQVKLTEELQAESTVRLFPSIAKLLGE 230

Query: 218 SNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPA--E 275
           S   + E   + E+  Q  I       ++         ++ +  +EHA++I   L A  E
Sbjct: 231 SPVTYEELLRHDEVIDQLLILGRAKLDVLRQIKPDAAGLVVSTDIEHARQIAQALEAMGE 290

Query: 276 DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335
              ++T  TP A++  LI  F+    R++V V +++ G D P + +   L    +   Y+
Sbjct: 291 SCQIVTNRTPDAQQ--LINTFRHSDCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYR 348

Query: 336 QIVGRGLRLAPGKTD 350
           Q++GR LR   G  D
Sbjct: 349 QVLGRVLRRKDGSDD 363