Pairwise Alignments

Query, 586 a.a., Putative DNA repair helicase RadD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 579 a.a., type III restriction enzyme, res subunit (RefSeq) from Shewanella loihica PV-4

 Score =  615 bits (1586), Expect = e-180
 Identities = 312/580 (53%), Positives = 394/580 (67%), Gaps = 6/580 (1%)

Query: 5   LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64
           LR YQ++AVDA +NHF+R    A++VLPTGAGKS+VIAELAR+A+GR LVL HVKELVAQ
Sbjct: 3   LRDYQRQAVDAAINHFKRSDDSALLVLPTGAGKSIVIAELARIAKGRTLVLTHVKELVAQ 62

Query: 65  NHAKYQALGLEADIFAAGLKRKESHVKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGD 124
           N  K   L  EA IF+AGLK+K +  K V  S+QS  RN   F   +SL+I+DECHR+ +
Sbjct: 63  NAEKVGLLTDEASIFSAGLKQKSTRNKTVVASIQSAVRNPKQFDEPYSLVIIDECHRVSN 122

Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184
           ++ESQYQQ+L+HL   N  LRLLGLTATP+RLG GWIY++HYHG +   E+ +F  CI+E
Sbjct: 123 EKESQYQQLLSHLRTKNSKLRLLGLTATPYRLGSGWIYRYHYHGKIGNTEQPVFEHCIFE 182

Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244
           LP+R +IK G+LTPP+ LD    QYDFS L   +NG ++EA+++  L    R T  I+ Q
Sbjct: 183 LPMRPLIKQGFLTPPKVLDGLSAQYDFSELSPNANGEYNEAEVDSLLHHAGRATKAIVEQ 242

Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYL 304
           I +   TR G +IFAATV HAKEI+ LL + +A LIT DTP  ERD +I+ FK +   YL
Sbjct: 243 IKQLTNTRAGTIIFAATVRHAKEIMTLLDSPEAGLITADTPSQERDAIIDAFKRRELSYL 302

Query: 305 VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364
           VNVAVLTTGFDAPHVDLIAILRPT SVSL+QQ+VGRGLR+  GK DCL++DYA N  DL+
Sbjct: 303 VNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRICEGKRDCLVIDYAANGFDLF 362

Query: 365 APEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQ 424
            PEVG PK  S +VPVQV CP CGFAN FWG    DG +IEHFGRRCQ   +D DG + Q
Sbjct: 363 FPEVGRPKPDSKSVPVQVPCPECGFANVFWGLVDGDGDIIEHFGRRCQAVVDDGDG-KHQ 421

Query: 425 CDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHG 484
           CDFRFR K CP C  ENDIAA+ C+ C + L+DPD  LK  L+ K   + RC  M  +  
Sbjct: 422 CDFRFRAKACPNCGEENDIAAKVCQHCQSTLIDPDKRLKEVLQQKHHHLFRCQEMLFEAD 481

Query: 485 HDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAAD-I 543
           +D     L++ Y D +G D    F   T AQ  AF  +F+  HTRTPG      +  D +
Sbjct: 482 NDR----LRVRYLDIEGNDFCCYFNFATKAQIRAFYGVFVHQHTRTPGQKQPTFSKVDQV 537

Query: 544 LAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHE 583
           +A +   R PD ++ +   + W++ E  FDY GRF   H+
Sbjct: 538 IAARDYFRMPDLLLLKKGKRGWELVESFFDYRGRFDSQHK 577