Pairwise Alignments

Query, 586 a.a., Putative DNA repair helicase RadD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 585 a.a., DNA damage response helicase (yejH or radD) (from data) from Marinobacter adhaerens HP15

 Score =  705 bits (1820), Expect = 0.0
 Identities = 351/586 (59%), Positives = 436/586 (74%), Gaps = 9/586 (1%)

Query: 3   FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62
           F LRPYQ+EAVDATL HFR+    AVIVLPTGAGKSLVIAELARLA+ ++LV+ HVKELV
Sbjct: 5   FKLRPYQREAVDATLAHFRKTDESAVIVLPTGAGKSLVIAELARLAKRKILVVTHVKELV 64

Query: 63  AQNHAKYQALGLEADIFAAGLKRKESHVKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122
            QNHAKYQ+ GL   IF+AGLKRKESH +V F SVQSV+ NLD F+ E+SL+I+DECHR+
Sbjct: 65  EQNHAKYQSYGLTGGIFSAGLKRKESHHQVTFASVQSVSANLDQFRDEYSLVIIDECHRV 124

Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182
             +E SQYQ+I+  L + N  L++LGLTATP+RL  GWIY++HY G VRG++   F+ CI
Sbjct: 125 SGEETSQYQRIIELLRQQNDSLKVLGLTATPYRLAMGWIYRYHYRGFVRGEDDKPFQHCI 184

Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242
           YELPL YMI  GYLT PE ++  V QYDFS L     G ++E D+N+ L K +R+T  II
Sbjct: 185 YELPLSYMINRGYLTRPELVNAAVAQYDFSALPKDRFGEYAERDVNQLLSKHKRVTRAII 244

Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFR 302
            Q++E AA R+GVMIFAATVEHA+E+ G LP  + ALITG T   +RD+LI+ FK ++ +
Sbjct: 245 EQVVELAAERQGVMIFAATVEHAREVAGYLPEHETALITGATDLKDRDLLIQRFKQRQLK 304

Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 362
           YLVNV+VLTTGFDAPHVD IAILRPT+SVSLYQQIVGRGLRL  GK DCL++DYAGN  +
Sbjct: 305 YLVNVSVLTTGFDAPHVDFIAILRPTQSVSLYQQIVGRGLRLDEGKQDCLVIDYAGNHVN 364

Query: 363 LYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG-- 420
           L+ PEVG PK   D+ PVQVFCP CGFAN FWGKT  DG +IEH+GRRCQG  E  DG  
Sbjct: 365 LHHPEVGEPKPNPDSEPVQVFCPGCGFANIFWGKTDDDGRVIEHYGRRCQGLLEPVDGVQ 424

Query: 421 --HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSG 478
               +QCD+RFRFK CP C AENDIAAR C +C   ++DPDD L+ AL+LKDA+V+RC+G
Sbjct: 425 DERPQQCDYRFRFKECPHCGAENDIAARNCHQCHKAIIDPDDQLRDALKLKDAMVIRCAG 484

Query: 479 MSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWI 538
           +SL       G  LKITY+ EDG ++ E F    P QR  F +LF R    +   P  + 
Sbjct: 485 ISLV----ADGSKLKITYHGEDGEELGESFDFSKPGQRAVFNKLFGRRFANSQA-PKAFS 539

Query: 539 TAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHEL 584
           +A ++L  +ALL  PDFV+AR +  YWQV+E+VFDY+G+FR A+E+
Sbjct: 540 SADEVLELEALLPAPDFVIARKQKHYWQVQERVFDYQGQFRKANEV 585