Pairwise Alignments

Query, 586 a.a., Putative DNA repair helicase RadD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 942 a.a., Type I restriction enzyme EcoR124II R protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 37/209 (17%)

Query: 2   IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLA 56
           +  LRPYQ  AV+  L+  +       I   TGAGK+L   + A+L        +V+ + 
Sbjct: 240 LMVLRPYQFYAVEKILDRVQNSNDNGYIWHTTGAGKTLTSFKAAQLVSELDDVDKVMFVV 299

Query: 57  HVKELVAQNHAKYQALGLEA----DIFAAGLKRKESHVKVVFGSVQSV---------ARN 103
              +L  Q  ++Y+A    A    D     +KR +S+ K++  ++Q +         +  
Sbjct: 300 DRHDLDTQTQSEYEAFEPGAVDSTDNTDELVKRLQSNSKIIITTIQKLNAAVSKTWYSSK 359

Query: 104 LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163
           +DA +    ++I DECHR      S +      + K   + ++ G T TP          
Sbjct: 360 IDAIRHSRIVMIFDECHR------SHFGDSHKKIMKFFGNAQIFGFTGTPI--------- 404

Query: 164 FHYHGMVRGDEKALFRDCIYELPLRYMIK 192
           F  + +     K +F +C++    +Y+IK
Sbjct: 405 FTENAVDGHTTKEIFGNCLH----KYLIK 429