Pairwise Alignments

Query, 608 a.a., RecBCD enzyme subunit RecD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1539 a.a., conjugal transfer protein from Sinorhizobium meliloti 1021

 Score = 69.3 bits (168), Expect = 1e-15
 Identities = 114/443 (25%), Positives = 174/443 (39%), Gaps = 73/443 (16%)

Query: 151 INWQKVAAAVALTR--RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA 208
           ++ ++V A   +TR   I+ + G  G GK+T    LLAA     +GE  R+  AA  GKA
Sbjct: 391 LDLEQVDAVRHVTRDNAIAAVVGLAGAGKST----LLAAARAAWEGEGRRVIGAALAGKA 446

Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268
           A  L +S G   R L   +                L  + G ++L+         DVLV+
Sbjct: 447 AEGLEDSSGIRSRTLASWE----------------LAWESGREQLQRG-------DVLVI 483

Query: 269 DEASMIDLPMMSRLIDALPD-HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327
           DEA M+    M+R++ A+ D  A+ + +GD  QL  +EAGA                  R
Sbjct: 484 DEAGMVSSQQMARVLKAVEDAGAKAVLVGDAMQLQPIEAGAAF----------------R 527

Query: 328 QLSRLTGTHVPAGTGTEA-ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386
            +S   G    AG   +  A  RD+  L  +           Q    +    +  +    
Sbjct: 528 AISERIGFAELAGVRRQRDAWARDASRLFARGKVEEGLDAYAQQGRIVETETRAEIVDRI 587

Query: 387 QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALRE 446
             D+ +  + LLQ   D        L G     D L   A  +  ++  NE      + E
Sbjct: 588 VADWANARRDLLQKSAD--GEHPGRLRG-----DELLVLAHTNDDVRKLNEALRNVMIGE 640

Query: 447 GPFGVAGLNE-----RIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGVFNGDIGIA 501
           G   + G  E      + +F    R I    ++R+ E R    AR      V NG +G  
Sbjct: 641 G--ALTGAREFQTARGLREFAAGDRIIFLE-NARFVEPR----ARRLGPQYVKNGMLGTV 693

Query: 502 L---DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558
           +   DR   T +   +  G    +        +  +A T+HKSQGS  D   ++     T
Sbjct: 694 VSTGDRRGDTLLSVRLDSGRDVVISQDSYRNVDHGYAATIHKSQGSTVDRTFVL----AT 749

Query: 559 PVVTRELVYTAVTRARRRLSLYA 581
            ++ + L Y A+TR R R  LYA
Sbjct: 750 GMMDQHLTYVAMTRHRDRADLYA 772