Pairwise Alignments

Query, 608 a.a., RecBCD enzyme subunit RecD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 757 a.a., exonuclease V subunit alpha from Marinobacter adhaerens HP15

 Score =  409 bits (1052), Expect = e-118
 Identities = 279/710 (39%), Positives = 390/710 (54%), Gaps = 118/710 (16%)

Query: 2   KLQKQLLEAVEHKQLRPLDVQFALTVA------GDE-HPAVTLAAALLSHDAGEGHVCLP 54
           K +  LL   + + +R LDV FA  +       G+   P + L AAL+SH  G GHVC+ 
Sbjct: 48  KTESLLLHWQQAEWIRALDVGFARLIRELSEEQGERPDPLLLLLAALVSHQVGRGHVCVD 107

Query: 55  LSRL-----------ENNEASHPLLATCVSE--------IGELQNWEECLLASQ---AVS 92
           L  L                  PL  +  SE        +  L    ECL   +   AVS
Sbjct: 108 LGNLLADAGHTLSLPPEESVQEPLTDSGTSEPDRPKPADVLALVTLPECLSILESACAVS 167

Query: 93  RGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEAL----------LAQTLD 142
            G   TP++L G RLYL R W  E+ +A     + H + +   L          L+  LD
Sbjct: 168 DGSHTTPLVLNGTRLYLRRFWRYEQRIAA---GIRHRLALPSPLADPESGPARTLSLALD 224

Query: 143 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GER 196
            LF  S+ +++QK+A A+A     +VI+GGPGTGKTTTV  LLAAL  +A       G +
Sbjct: 225 TLFRSSEPVDYQKLACALAARNHFAVITGGPGTGKTTTVVNLLAALQAVAGESPERAGRK 284

Query: 197 CRIRLAAPTGKAAARLTESLGKALRQLPLTD----EQKKRIPEDASTLHRLLGAQPGSQR 252
            RIRLAAPTGKAAARL ES+G A+ +LPL +         IP   +TLHRLLG++P +++
Sbjct: 285 YRIRLAAPTGKAAARLNESIGGAVSRLPLAELPGNVDLNDIPTRVTTLHRLLGSRPDTRK 344

Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 312
            RH+  NPL +D+LV+DEASM+D+ +M+ + DALP +A++I LGD+DQLASV+AGAVLG+
Sbjct: 345 FRHNRDNPLLVDILVIDEASMVDVDLMASVFDALPANAQLILLGDKDQLASVDAGAVLGE 404

Query: 313 ICAYA-NAGFTAERARQLSRLTGTHVPAGTGTEAASLRD-SLCLLQKSYRFGSDSGIGQL 370
           +C  A  A +T E AR L+ + G+ +P     E     D ++ +L+KSYRF  DSGI   
Sbjct: 405 LCQRALLAHYTPETARWLAAMAGSEIPESLVDETGQPMDQAVAMLRKSYRFREDSGIRAF 464

Query: 371 AAAINRG--DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL---------------- 412
           A A+N    D   ++ + + +F D+   +L +G       E+ L                
Sbjct: 465 AEAVNTNALDNAMLRQIREAEFDDV---ILLNGRSKSGDTEDTLDLVCRHAITGSPEAFR 521

Query: 413 ----------------AGYGRYLDLLQ--------ARAEPDL----IIQAFNEYQLLCAL 444
                            GY  YL+ LQ         R + D     +++AF+++Q+LCAL
Sbjct: 522 NAGQGRQVNGQSLPPPVGYRHYLERLQNHGLNESSPREDWDAMAVQLLEAFSDFQVLCAL 581

Query: 445 REGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGVFNGDIGIAL-- 502
           R+GP+GV GLN+RI + +  ++ I R     WYEGRPV+I  ND  LG+ NGDIGIA+  
Sbjct: 582 RKGPWGVEGLNDRIARQLLAEKLISR--AEGWYEGRPVLITGNDYNLGLMNGDIGIAVNV 639

Query: 503 -----DRGQGT-RVWFAMPD----GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552
                D G+    +  A PD    G I+ + PSRL + ET +AMTVHKSQGSEF+H  L+
Sbjct: 640 PWDRTDTGEPRYTLRVAFPDSDTAGGIRWISPSRLQQLETVYAMTVHKSQGSEFNHTCLV 699

Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYA-DERILSAAIATRTERRSGLA 601
           LP + +PV+T+ELVYT +TRAR   SL A D  +L  A++ +  R SGLA
Sbjct: 700 LPDRLSPVLTKELVYTGITRARNWFSLIAGDIPVLREAVSQQVSRASGLA 749