Pairwise Alignments

Query, 1180 a.a., RecBCD enzyme subunit RecB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score =  980 bits (2534), Expect = 0.0
 Identities = 558/1199 (46%), Positives = 759/1199 (63%), Gaps = 33/1199 (2%)

Query: 4    VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELLVV 62
            +A TLD LR PL G RLIEASAGTGKT+TIA LYLRL+LG G        PL+V+++LVV
Sbjct: 8    LAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVV 67

Query: 63   TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122
            TFTEAATAELR RIR  +H+ R+A  R  +D+PL   LL E  D   A   LL AERQMD
Sbjct: 68   TFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMD 127

Query: 123  EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182
            EAA+FTIHGFCQRML  NAFESG  FE + + DES L+ Q  AD+WRR  YPLP  +A  
Sbjct: 128  EAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASE 187

Query: 183  VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242
            V   W  P ALL +I  YL G    +  P  + +  A + AQI ARI  +KQ W     E
Sbjct: 188  VRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQI-ARICEIKQHWLVEREE 246

Query: 243  LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302
            ++  +  +G D  K +++   + +  + AWA+ ET+   +P  LE+F+Q  L  ++K G 
Sbjct: 247  IEPAV--TGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKSKKGN 304

Query: 303  ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL 362
              P+  LFE I+  LAEP+S++  ++  A+   R  +A+ K     L FDD+L++L +AL
Sbjct: 305  P-PQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL 363

Query: 363  RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAF 422
             ++   +L   IRT +PVAMIDEFQDTDP QY IF R++   P+  LL+IGDPKQAIYAF
Sbjct: 364  DNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIYAF 423

Query: 423  RGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSA 481
            RGADIFTY+KAR++V+AHYTL TNWRS+  MV +VN++FS     F++  +IPF PV ++
Sbjct: 424  RGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVAAS 483

Query: 482  GKNQALRFVFKGETQPAMKMWLME--GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539
                   +  +G+ QPA+  W  E   +     DY + MA+ CAAQI+  L A   G A 
Sbjct: 484  PGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASGAAT 543

Query: 540  LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599
               G+    + A D++VLVR+  EA  VRDAL+   I SVYLSNRDSVF +  AQ++  L
Sbjct: 544  FHRGE---AIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERL 600

Query: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659
            L AV  PE E  LR+A+A+++  L A +++ LNNDE+ W+ ++ EF  YR++W +RGV+P
Sbjct: 601  LLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLP 660

Query: 660  MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719
            MLRA+++ R+IAE  LA + GER LTD LHISELLQ+A  +++S+  L+R+L+Q + +  
Sbjct: 661  MLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAA 720

Query: 720  ---SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEA 776
                 +  Q  RLES++ LVQIVTIHKSKGLEYPLV+LPF+ ++R   +  Y+D  S   
Sbjct: 721  QGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATT 780

Query: 777  VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836
             +DL    E++  A+ ERLAEDLRLLYVALTR+V+ C +G+APL R     +  T  H+S
Sbjct: 781  WVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPL-RNGNSSQEPTSAHRS 839

Query: 837  ALGRLLQKGEPQDAAGLRTCIEALCDD--DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894
            A+G LLQ G+    A L+  +   C++  D+          Q +Q   +   EL A+ L 
Sbjct: 840  AMGFLLQDGQEGGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELS 899

Query: 895  RLPGDNWRVTSYSGLQQRGHGIAQDLMPRL--------DVDAAGV--ASVVEEPTLTPHQ 944
            +     WRVTSYSGL  +      D +  L        D+D+A     + +E    +   
Sbjct: 900  QAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFN 959

Query: 945  FPRGASPGTFLHSLFEDLDFTQPV--DPNW--VREKLELGGFESQWEPVLTEWITAVLQA 1000
            FPRGA PGTFLHSLFE++DF Q    +PN   + E +E    ES+W PVL + +  VL  
Sbjct: 960  FPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLST 1019

Query: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060
            PL+   + L Q+ A  +  E+EF LPI E L A  L+ + ++ DPLSA    L F  V+G
Sbjct: 1020 PLDGKALRLQQIMAAQRLTELEFLLPI-EVLDAPTLNRITQRHDPLSAHAGDLGFHAVQG 1078

Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120
            MLKGFIDLVF+++GRYY+LD+KSN LG+D +AY  Q + +AM  HRYDLQYQ+Y LALHR
Sbjct: 1079 MLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHR 1138

Query: 1121 YLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179
            +LR R+A Y+YE HFGGV YLFLRG+D     QG++ T+P+  L+  +D + AG  L +
Sbjct: 1139 FLRSRLAHYNYEQHFGGVFYLFLRGMD-GRGDQGVFHTKPSLALLDELDGLIAGRELAQ 1196