Pairwise Alignments

Query, 1180 a.a., RecBCD enzyme subunit RecB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1189 a.a., ATP-dependent nuclease/helicase from Sinorhizobium meliloti 1021

 Score = 89.0 bits (219), Expect = 2e-21
 Identities = 130/541 (24%), Positives = 235/541 (43%), Gaps = 69/541 (12%)

Query: 329 TRALAEIRETVARE----KRRRGELGFDDMLSRLDSAL-RSESGEVLAAAIRTRFPVAMI 383
           TRA   + E + R+    K+ R +L F+D++ R  + L RS+ G  +   +       ++
Sbjct: 359 TRAALVLAERLNRDYEALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILV 418

Query: 384 DEFQDTDPQQYRIFRRIW--HHQPETA------LLLIGDPKQAIYAFRGA--------DI 427
           DE QDT P Q+ I + +       ETA      +  +GD KQ+IY+F+GA          
Sbjct: 419 DEAQDTSPAQWTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFSREST 478

Query: 428 FTYMKARSEVHAHYT---LDTNWRSAPGMVNSVNKLFSQTDDA--FMFREIPFIPVKSA- 481
            T  + R+  + H++   L  ++RS   ++++V+ +F+   +A     R    +   +  
Sbjct: 479 LTERRVRAG-NKHFSPIRLQLSFRSTVDVLSAVDTVFANPGNARGLSARSEAIVHASNRI 537

Query: 482 GKNQALRF--VFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539
           G+  A+    V   E   + + W    ++       + +A+  AA + DW+     G   
Sbjct: 538 GQPGAVDLWDVIAPEPAASEEDWTAPFDATPERAPVNILARRIAAVLEDWI-----GRET 592

Query: 540 LMNGDDARPVRASDISVLVRSRQEAAQVRDALT--LLEIPSVYLSNRDSVFET--LEAQE 595
           ++     R +R  D+ VLVR R       +ALT  L    ++ ++  D +  T  +  Q+
Sbjct: 593 VIEKGVRRAMRPGDVIVLVRKRDAFV---NALTRALKRRGNIPVAGADRLVLTSHIAVQD 649

Query: 596 MLWLLQAVMTPERENTLRSALATSMMGLNALDIETL----NNDEHAW----DVVVEEFDG 647
           ++ L + V+ PE + +L + L + ++ L   D+  L       E  W        EE   
Sbjct: 650 LIALGRFVLLPEDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQAGAEETSR 709

Query: 648 YRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL--HISELLQEAGT-QLESE 704
           Y +  R       L   +   +    +L   GG R     L   +S++L E  T  L+ E
Sbjct: 710 YHEAVRTLSRYSGLARELLPHDFYARVLGADGGRRAFLARLGSEVSDILDEFLTFALDHE 769

Query: 705 HALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL---------- 754
              +  L   I   +  A + +   + ++  V+++T+H +KGLE P+V+L          
Sbjct: 770 RNGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVR 829

Query: 755 PFITNFRVQEQA-FYHDRHSFEAVLDLNAAPESVDLAEAERL-----AEDLRLLYVALTR 808
             +++ R  E+A   H   +        +AP S+  A+ ERL      E  RLLYV +TR
Sbjct: 830 QQVSDLRFLEKAQVDHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYRRLLYVGMTR 889

Query: 809 S 809
           +
Sbjct: 890 A 890



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 22/144 (15%)

Query: 21  IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80
           + A+AG+GKT  +    +RLLL      A  RP     +L +T+T+AA +E+  R+   +
Sbjct: 36  VSANAGSGKTHVLTQRVIRLLL------AGCRP---SAILCLTYTKAAASEMSNRVFEKL 86

Query: 81  HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA-------AVFTIHGFC 133
            E        T D+   E+ +E I+ K      +  A R    A        + TIH FC
Sbjct: 87  AEW------ATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTIHAFC 140

Query: 134 QRMLNLNAFESGMLFEQQLIEDES 157
           + +L+    E+ +     +++D +
Sbjct: 141 EALLHQFPLEANVAGHFSVLDDRA 164