Pairwise Alignments

Query, 1180 a.a., RecBCD enzyme subunit RecB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1187 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score = 86.7 bits (213), Expect = 1e-20
 Identities = 125/536 (23%), Positives = 219/536 (40%), Gaps = 86/536 (16%)

Query: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAM----IDEFQDTDPQQYRI 396
           R KR  G + ++D++    +A R  +G+  AA +  +    +    +DE QDT P Q+ I
Sbjct: 386 RRKRALGRMDYEDLIL---AARRLLAGDGAAAWVLFKLDGGLDHLLVDEAQDTSPDQWAI 442

Query: 397 FRRI----------WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH-------- 438
              +          W       +  +GD KQ+IY F+GAD   +   R   H        
Sbjct: 443 ASALAGEFFTDSARWDGTRPRTVFAVGDRKQSIYGFQGADPKAFEDMRRHFHDAVSDIGG 502

Query: 439 --AHYTLDTNWRSAPGMVNSVNKLFSQTD----------DAFMFREIPFIPV-KSAGKNQ 485
             A   L+ ++RS   ++ +VN +F++            D+ +  +I      K AG   
Sbjct: 503 HFAEVPLNISFRSTRAVLEAVNAVFARQPARDGVAQDDADSGVAEDITHHAFRKDAGGLV 562

Query: 486 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD 545
            L    +   +     W    E  G+   ++ +A+  A +I+     G+  E+       
Sbjct: 563 ELWPAMEPAPRVVGDPWKPPVERIGLESARARLAKRVAQRIKTMTSGGELLES------Q 616

Query: 546 ARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS--NRDSVFETLEAQEMLWLLQAV 603
            RP+R  DI VLVR R       + ++ L+   V ++  +R ++ + L   +++ L +A+
Sbjct: 617 GRPIRPGDILVLVRRR--GGFEEELVSALKSAKVEVAGVDRMTLTDQLAVMDLIALGKAL 674

Query: 604 MTPERENTLRSALATSMMGLNALDIETL----NNDEHAWDVVVEEFDGYRQIWRKRGVMP 659
           + PE + TL S L   ++GL+   + TL      DE  WD +           +   ++ 
Sbjct: 675 LLPEDDLTLASVLKGPLIGLDEDALFTLARDRGRDERLWDRLRPHAGAENAYGKAMEIIE 734

Query: 660 MLR--------------ALMSARNIAENLLATAGGERR--LTDILHISELLQEAGTQLES 703
            LR               L    N    LL   G E    + + L ++   +  G    +
Sbjct: 735 PLRDRAGRLAPHEFYAHVLDGPLNGRRLLLGRLGPEAEDPIDEFLALTLAHERVGP--PA 792

Query: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763
               + WL +  +E   +     +        V+I+T+H SKGL+ P+V+LP        
Sbjct: 793 LQGFLSWLEKGTVEIKRDLDQGAL------DAVRIMTVHGSKGLQAPVVFLPDTLAKPTG 846

Query: 764 EQ--AFYHDRHSFEAV-------LDLNAAPES-VDLAEAERLAEDLRLLYVALTRS 809
                +  D+   +A+        D  AA E+ +D  + ER  E  RLLYVA+TR+
Sbjct: 847 NDLLLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREYRRLLYVAMTRA 902



 Score = 48.9 bits (115), Expect = 2e-09
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 20/155 (12%)

Query: 21  IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80
           + ASAGTGKT  +    LRLLL     A  P     + LL +TFT+AA AE+  R+ + +
Sbjct: 36  VAASAGTGKTKVLTDRVLRLLL-----AGTPP----QRLLCLTFTKAAAAEMANRVSAVL 86

Query: 81  HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAA--------VFTIHGF 132
                A L E         LL  + +  +A + L    R++            + TIHGF
Sbjct: 87  AGW--ATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRLFAQVLDCPGGLRIQTIHGF 144

Query: 133 CQRMLNLNAFESGMLFEQQLIED-ESLLRYQACAD 166
           CQ +L     E+G+    ++++D E+   +Q+  D
Sbjct: 145 CQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARD 179