Pairwise Alignments

Query, 1180 a.a., RecBCD enzyme subunit RecB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1234 a.a., exodeoxyribonuclease V, beta subunit from Marinobacter adhaerens HP15

 Score =  724 bits (1869), Expect = 0.0
 Identities = 507/1259 (40%), Positives = 685/1259 (54%), Gaps = 112/1259 (8%)

Query: 1    MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFP-RPLTVEEL 59
            M++    LDPL L L G  LIEASAGTGKTFTIA LY+RL+LG G S   P + L    L
Sbjct: 5    MTNRNPNLDPLALTLNGSALIEASAGTGKTFTIAILYVRLVLGQGQSPDSPLQNLLPPNL 64

Query: 60   LVVTFTEAATAELRGRIRSNIHELR--IACLRETTDNPLYERLLEEIDDKA--QAAQW-- 113
            LVVTFTEAAT ELR RIR+ + +     +   +  + P    L+ ++ D++    A W  
Sbjct: 65   LVVTFTEAATKELRDRIRTRLTQAAEVFSDAPDEPNPPAETALIYQLRDESYPDPASWPE 124

Query: 114  ----LLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR 169
                LLLA   MDEAAV TIH FC RML+ +AF+SG LF+  L  D+S L  +   D+WR
Sbjct: 125  CRKKLLLAAEWMDEAAVSTIHSFCNRMLSEHAFDSGSLFKLTLETDQSELLDEVARDYWR 184

Query: 170  RHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPD------DETLASRHA 223
               YPLP  +       WK P  L + +   +  + P+    PP+      D+ +  R  
Sbjct: 185  TFVYPLPPALMDEALSHWKTPGDLRQGVRNLI--DDPLSLGTPPESVHQAIDQVVHRRLE 242

Query: 224  QIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQA--KWIDKISAWAEEETNSYQ 281
            Q  +       QWRD V EL   +      +R    S  A  K  D + AWAE +    +
Sbjct: 243  QSQSLKAHPWSQWRDDVIEL---LNDLNKSKRLHGASKNAMIKVWDLLVAWAESDDLLPE 299

Query: 282  LPESLEKFSQRF---LEDRTKAGGETPRHPLFEAIDQLL---AEPLSIRDLVITRALAEI 335
              +S   F  +    L+   K     P HP F+AI  LL       S +  ++  A   +
Sbjct: 300  KIDSAAGFKNQTPEGLDKILKGDDSAPHHPAFDAIGALLDFSQNQPSAKSDILRHASHWM 359

Query: 336  RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYR 395
             E +  EK++R E+GFDD+L+RLD AL    G+ LAA IR +FPVA+IDEFQDTDP QYR
Sbjct: 360  AERLESEKQKRSEMGFDDLLTRLDDALHGPRGDQLAATIRRQFPVALIDEFQDTDPVQYR 419

Query: 396  IFRRIWH---HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAP 451
            IF RI++       T LL+IGDPKQAIY FRGADI+TY++AR  V    YTL  N+RSA 
Sbjct: 420  IFDRIYNVSGGDSGTCLLMIGDPKQAIYGFRGADIYTYLQARQGVKERTYTLGKNFRSAK 479

Query: 452  GMVNSVNKLFSQTDD-----AFMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKM 501
             MV +VN++F  +D      AF+F +     +PF  V + G  ++  +   GE QP++  
Sbjct: 480  TMVAAVNRVFDHSDQNSRDGAFLFGKGDTSPLPFQGVDANGTKRS--WSINGEVQPSLVF 537

Query: 502  WLME-GESCGV--GDYQSTMAQVCAAQIRDWL---QAGQRGEALLMNGDDARPVRASDIS 555
            W  E GE  GV  G  ++ MA+ CA++I   L   QAGQ G AL  N  D  PV   DI+
Sbjct: 538  WTHESGEEEGVAKGAARADMAETCASEIARLLTLGQAGQAGFALPDNPSDLEPVAPKDIA 597

Query: 556  VLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSA 615
            +LV +R EA+ VRDAL    I SVYLS+RDSV  + E+QE+L  L+A   P +   +R+A
Sbjct: 598  ILVNNRNEASAVRDALGQRRIKSVYLSDRDSVLTSRESQEILCWLRAFAEPRQLAYIRAA 657

Query: 616  LATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLL 675
            LAT  +G +   +  L  DE   +  +E F GY+Q W+K+GV+PMLR  +    +   LL
Sbjct: 658  LATPTLGQSWHAMNQLLTDELVLEREIERFIGYQQQWQKQGVLPMLRTFLMDFEVPGQLL 717

Query: 676  ATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL 735
                GERRLTDILHI+ELLQ+   QL+ EHALV   +Q +   D     + +RLESD  L
Sbjct: 718  QRPDGERRLTDILHIAELLQQDSLQLDGEHALVHHYTQILRAADEEDEHRTLRLESDAGL 777

Query: 736  VQIVTIHKSKGLEYPLVWLPFITNFRVQ--EQAF--YHDRHSFEAVLDLNAAPESVDLAE 791
            V+++T+HKSKGLEYPLV+LPF T FR Q  +QAF  YH+      V   + +P+ V  A+
Sbjct: 778  VKVITVHKSKGLEYPLVFLPFGTAFRAQSEKQAFVRYHNEQG-RLVTVFDPSPDDVARAD 836

Query: 792  AERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAA 851
             ERL ED+R  YVALTR+ +   +G A L           +  QS LG L+     +  +
Sbjct: 837  RERLGEDIRKFYVALTRARFATWVGTAAL----------DNWQQSGLGYLIGS---EGQS 883

Query: 852  GLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELN-AKTLQRLPGDNWRVTSYSGLQ 910
             +  C+  L +     +     D      +  +   L  A    R   ++W + SYS ++
Sbjct: 884  RISDCLGKLAEGRAEIRITPLPDPDDTHYHGPAPEALGPAMVSSREAREDWWIASYSSIE 943

Query: 911  ---QRGHGIAQDLMPRLDVDAAGVASVVEEPTL-------------TPHQFPRGASPGTF 954
                 G GIA       +V+ A   +++EE TL               H FP+GA PGTF
Sbjct: 944  YTGMTGTGIAF----TGEVEDAQTQNLLEESTLDEEENPAQMANQRNQHNFPKGAGPGTF 999

Query: 955  LHSLFE---DLDFTQPVD-PNWVREKLE----LGGFESQWEPVLTEWITAVLQAPLN--- 1003
            LH L E      F + VD P  + E+L       G+ ++W   L  W+ A++  PL+   
Sbjct: 1000 LHELLEWCTQQGFQRVVDNPPLLHEQLTRRCGTRGW-NEWVEPLVRWLLALISKPLSLDR 1058

Query: 1004 ---ETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060
               ET V LS L+    ++E  F    S  +   +LD L+       A  P +E  +  G
Sbjct: 1059 AGAET-VCLSDLTTLRPELEFWFE---SRNVSIRKLDELVTAHTLNRADRPRVEETRFNG 1114

Query: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120
            MLKGFIDLVF H GRYY+LDYKSN LGED+SAYT QAM  A+   RYDLQY LY LALHR
Sbjct: 1115 MLKGFIDLVFEHNGRYYVLDYKSNTLGEDNSAYTDQAMGNAILDKRYDLQYVLYLLALHR 1174

Query: 1121 YLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179
             L+ R+ DYDY+ H GG +YLFLRG+D      G +T +P   LI  +D +F G ++ E
Sbjct: 1175 LLKARLPDYDYDRHIGGAVYLFLRGIDSS--TGGAFTDKPPRALIEQLDALFDGESVAE 1231