Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  410 bits (1055), Expect = e-119
 Identities = 206/297 (69%), Positives = 236/297 (79%)

Query: 1   MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60
           +  D   +EQFLD +W E+ LAENT+ +YR DLS ++EW+      L       LQ   +
Sbjct: 5   LSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQS 64

Query: 61  ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120
              E  YK TS AR+LSA+RRLFQYL+REK R DDPSA L SPKLP RLPKDLSEAQVE 
Sbjct: 65  WLSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEA 124

Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180
           LL AP    PLELRDKAMLE+LYATGLRV+ELV LTM ++SLRQGVVRV+GKG KERLVP
Sbjct: 125 LLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVP 184

Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240
           +GE A+ W+ET+L+ GR  LL   + D++FPS R QQMTRQTFWHRIKHYAV+AGID EK
Sbjct: 185 MGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEK 244

Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297
           LSPHVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+QLH +HHPR
Sbjct: 245 LSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301