Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  230 bits (587), Expect = 3e-65
 Identities = 139/305 (45%), Positives = 182/305 (59%), Gaps = 23/305 (7%)

Query: 6   ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65
           A +E FL+ +  E+  A NTL +Y RDL     +L  RG  L  A +DDL++ L+     
Sbjct: 7   AYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAGQ 66

Query: 66  GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL--- 122
           G+KA+S AR LSA+R+ +++LY E  R DDP+  L +PK  + LPK LS   V RL+   
Sbjct: 67  GFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQA 126

Query: 123 ----QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178
               ++   D   +LR  A++E+LYATG+RVSELV L  S ++     + + GKGNKERL
Sbjct: 127 EAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKERL 186

Query: 179 VPLGEEAVYWLETYLEH------GRPWLLNGVSIDVLFPSQ-RAQQMTRQTFWHRIKHYA 231
           VPL + A+  +  Y E         PWL         FPS  ++  + RQ F   +K  A
Sbjct: 187 VPLSQAAIRAMRAYGEALQEESADSPWL---------FPSNGKSGHLPRQVFARDLKSLA 237

Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291
             AGI    +SPHVLRHAFA+HLL +GADLR VQ LLGHSD+STTQIYTHV  ERL  L 
Sbjct: 238 ARAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLV 297

Query: 292 QQHHP 296
           Q HHP
Sbjct: 298 QNHHP 302