Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  203 bits (517), Expect = 4e-57
 Identities = 131/296 (44%), Positives = 170/296 (57%), Gaps = 9/296 (3%)

Query: 9   EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68
           E FL+ +  E+  A  T+ AY RDL     +L  +GL   T     L+A LA     G  
Sbjct: 23  EAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGLA 82

Query: 69  ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128
             S AR LS +R+   +L  E  R DDP+  L SP+L + LP+ LSEA+V+ LL A    
Sbjct: 83  PRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAG 142

Query: 129 QPLE-LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187
           +    LR + +LE+LY+TGLRVSELV L +S  +     + V GKG+KERLVPLG  A  
Sbjct: 143 EGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARA 202

Query: 188 WLETYLEHGRPWLLNGVSID------VLFPSQRAQ-QMTRQTFWHRIKHYAVLAGIDSEK 240
            L  +L   RP  L             LFPS  A+  +TR  F   +   A+ AGID  +
Sbjct: 203 ALRDWLI-ARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGELALRAGIDPAR 261

Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296
           +SPHVLRH FA+H+L HGADLR VQ LLGH+D++TTQIYTHV  +RL  L +  HP
Sbjct: 262 VSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHP 317