Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 311 a.a., Probable integrase/recombinase from Mycobacterium tuberculosis H37Rv

 Score =  202 bits (514), Expect = 8e-57
 Identities = 129/310 (41%), Positives = 181/310 (58%), Gaps = 14/310 (4%)

Query: 1   MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59
           MK    +++ +LD L +E+ +A NTL++YRRDL    + L  RG+T LA     D+   L
Sbjct: 1   MKTLALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFL 60

Query: 60  AERLEG-------GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKD 112
                G          A S+AR L AVR L ++   E   E D +  +  P   +RLPK 
Sbjct: 61  VALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKS 120

Query: 113 LSEAQVERLLQAPLIDQP----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR 168
           L+  +V  LL+    D+P    L LR++A+LE+LY+TG R+SE VGL + DI      V 
Sbjct: 121 LTIDEVLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVL 180

Query: 169 VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRI 227
           + GKG K+RLVP+G  AV+ L+ YL  GRP L   G     +F + R  +++RQ+ W  +
Sbjct: 181 LRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVL 240

Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287
           +  A  AGI +  +SPH+LRH+FATHLL  GAD+RVVQ LLGH+ ++TTQIYT V    L
Sbjct: 241 QDAAERAGI-TAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHAL 299

Query: 288 RQLHQQHHPR 297
           R++    HPR
Sbjct: 300 REVWAGAHPR 309